Variant report

Variant	rs1105608
Chromosome Location	chr8:59879121-59879122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10098381	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs10504273	0.88[CEU][hapmap]
rs10504275	0.88[CEU][hapmap]
rs11777659	0.86[ASW][hapmap];0.88[CEU][hapmap]
rs11778333	0.87[CEU][hapmap];0.96[GIH][hapmap]
rs11779216	0.96[GIH][hapmap]
rs11779544	1.00[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs11783096	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs13252116	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13258467	0.85[EUR][1000 genomes]
rs13259869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13262426	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13262617	0.90[LWK][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs16924199	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16924207	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16924213	1.00[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs16924253	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16924314	0.88[CEU][hapmap]
rs17232126	0.86[ASW][hapmap];1.00[CEU][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17241424	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs17301816	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs34434301	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984848	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6988646	1.00[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs6996574	0.88[CEU][hapmap]
rs71521437	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7823862	1.00[CEU][hapmap]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
5	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:59872800-59880000	Weak transcription	Pancreas	Pancrea
10	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:59873000-59883000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:59876200-59880400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:59876400-59886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
18	chr8:59877200-59879200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:59877600-59887600	Weak transcription	Gastric	stomach
21	chr8:59878000-59879200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:59878000-59879200	Enhancers	Stomach Smooth Muscle	stomach
23	chr8:59878000-59879200	Enhancers	Osteobl	bone
24	chr8:59878400-59879200	Enhancers	Fetal Heart	heart
25	chr8:59878600-59879200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr8:59878600-59879200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr8:59878600-59879200	Enhancers	Fetal Stomach	stomach
28	chr8:59878600-59879200	Genic enhancers	Fetal Thymus	thymus
29	chr8:59878600-59879200	Enhancers	Left Ventricle	heart
30	chr8:59878600-59879200	Enhancers	Lung	lung
31	chr8:59878600-59880400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr8:59878800-59879200	Enhancers	Spleen	Spleen
33	chr8:59878800-59881000	Weak transcription	HSMM	muscle
34	chr8:59878800-59883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr8:59879000-59879200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:59879000-59879200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:59879000-59879800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:59879000-59880000	Weak transcription	Right Ventricle	heart
39	chr8:59879000-59881000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:59879000-59884800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:59879000-59887800	Weak transcription	Dnd41	blood

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