Variant report

Variant	rs13252116
Chromosome Location	chr8:59813809-59813810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10098381	0.88[CEU][hapmap]
rs10504273	0.88[CEU][hapmap]
rs10504275	0.88[CEU][hapmap]
rs1105608	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11777659	0.87[ASW][hapmap];0.88[CEU][hapmap];0.89[YRI][hapmap]
rs11778333	0.86[CEU][hapmap]
rs11779544	1.00[CEU][hapmap];0.85[TSI][hapmap];0.96[EUR][1000 genomes]
rs11782466	1.00[YRI][hapmap]
rs11783096	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap];0.93[TSI][hapmap];1.00[EUR][1000 genomes]
rs13258467	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13259869	0.83[EUR][1000 genomes]
rs13262426	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13262617	0.82[GIH][hapmap];0.83[MKK][hapmap]
rs16924199	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16924207	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924213	1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];1.00[EUR][1000 genomes]
rs16924253	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16924314	0.88[CEU][hapmap]
rs17232126	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17232411	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs17241424	0.88[CEU][hapmap]
rs17298221	1.00[YRI][hapmap]
rs17301816	1.00[CEU][hapmap]
rs34434301	0.83[EUR][1000 genomes]
rs6984848	1.00[CEU][hapmap]
rs6988646	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996574	0.88[CEU][hapmap]
rs7815098	0.90[YRI][hapmap]
rs7823862	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
4	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
5	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:59808600-59815200	Weak transcription	Osteobl	bone
9	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
10	chr8:59810200-59814800	Weak transcription	Brain Germinal Matrix	brain
11	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:59811600-59815200	Weak transcription	Fetal Lung	lung
13	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr8:59811800-59814000	Weak transcription	Dnd41	blood
15	chr8:59811800-59815400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:59811800-59815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:59811800-59815600	Weak transcription	HUVEC	blood vessel
18	chr8:59811800-59815600	Weak transcription	NHDF-Ad	bronchial
19	chr8:59811800-59816800	Weak transcription	Fetal Thymus	thymus
20	chr8:59811800-59817000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:59812000-59818000	Weak transcription	Primary T cells from cord blood	blood
23	chr8:59812000-59819800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:59812200-59814000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:59812800-59815600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:59813200-59815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:59813400-59815200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr8:59813600-59817400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr8:59813800-59814200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:59813800-59814400	Enhancers	Fetal Brain Male	brain
32	chr8:59813800-59814600	Enhancers	Fetal Brain Female	brain

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