Variant report

Variant	rs407440
Chromosome Location	chr8:59938792-59938793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10504276	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12546876	0.86[CEU][hapmap]
rs16924486	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs389349	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs402443	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs420969	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs4737532	0.84[CEU][hapmap]
rs826419	0.97[EUR][1000 genomes]
rs826595	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9643507	1.00[CHB][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59921400-59942200	Weak transcription	Gastric	stomach
2	chr8:59928600-59941200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59928600-59941800	Weak transcription	HUVEC	blood vessel
4	chr8:59929800-59939600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:59929800-59945000	Weak transcription	Fetal Stomach	stomach
6	chr8:59930200-59939600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:59930200-59939600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:59931200-59941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:59931400-59945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:59932000-59955600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:59933600-59942000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:59933600-59950800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:59933800-59940800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:59933800-59941400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:59933800-59941400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:59933800-59941800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:59934000-59941200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:59934000-59942600	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:59934000-59945800	Weak transcription	Osteobl	bone
20	chr8:59934800-59941800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:59935200-59945800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:59935600-59939200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:59935600-59941800	Weak transcription	Small Intestine	intestine
24	chr8:59935800-59940600	Weak transcription	Brain Germinal Matrix	brain
25	chr8:59936800-59939000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:59936800-59944600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:59937400-59944000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:59937800-59941800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:59938000-59939400	Weak transcription	Dnd41	blood
30	chr8:59938200-59938800	Weak transcription	Primary T cells from cord blood	blood
31	chr8:59938400-59939400	Weak transcription	Fetal Thymus	thymus
32	chr8:59938400-59944600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:59938600-59945000	Weak transcription	Thymus	Thymus

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