Variant report

Variant	rs16924330
Chromosome Location	chr8:59877808-59877809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10092016	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10504276	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11995430	1.00[CEU][hapmap]
rs11998693	1.00[CEU][hapmap]
rs16918743	1.00[CEU][hapmap]
rs16924012	1.00[CEU][hapmap]
rs16924088	1.00[CEU][hapmap]
rs16924147	1.00[CEU][hapmap]
rs16924339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924342	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924346	0.89[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs16924369	1.00[CEU][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs16924384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924484	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924486	1.00[CEU][hapmap]
rs16924544	1.00[EUR][1000 genomes]
rs2166923	1.00[CEU][hapmap]
rs41468545	1.00[CEU][hapmap]
rs4360283	1.00[CHB][hapmap]
rs60851084	1.00[EUR][1000 genomes]
rs7001272	1.00[EUR][1000 genomes]
rs7007391	1.00[EUR][1000 genomes]
rs73684880	1.00[EUR][1000 genomes]
rs7821135	1.00[AMR][1000 genomes]
rs7821556	1.00[CEU][hapmap]
rs7826909	1.00[AMR][1000 genomes]
rs9643507	1.00[CEU][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
7	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:59871600-59878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:59871600-59878000	Weak transcription	HSMM	muscle
10	chr8:59871800-59878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:59871800-59878600	Weak transcription	NHLF	lung
12	chr8:59872400-59878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:59872400-59878600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:59872600-59878600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:59872800-59878600	Weak transcription	Fetal Stomach	stomach
19	chr8:59872800-59880000	Weak transcription	Pancreas	Pancrea
20	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr8:59873000-59883000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:59873600-59878000	Weak transcription	Osteobl	bone
23	chr8:59873600-59878400	Weak transcription	Fetal Heart	heart
24	chr8:59873600-59878600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:59874000-59878600	Weak transcription	NHDF-Ad	bronchial
28	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:59876200-59880400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:59876400-59886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
32	chr8:59876600-59878600	Weak transcription	Fetal Thymus	thymus
33	chr8:59877000-59878800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:59877200-59878000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr8:59877200-59878600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr8:59877200-59879200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:59877600-59878600	Weak transcription	Dnd41	blood
39	chr8:59877600-59887600	Weak transcription	Gastric	stomach

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