Variant report

Variant	rs16924342
Chromosome Location	chr8:59884605-59884606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59884254..59886843-chr8:59905143..59907146,2	K562	blood:

Variant related genes	Relation type
ENSG00000254048	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10092016	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10504276	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs11995430	1.00[CEU][hapmap]
rs11998693	1.00[CEU][hapmap]
rs16918743	1.00[CEU][hapmap]
rs16924012	1.00[CEU][hapmap]
rs16924088	1.00[CEU][hapmap]
rs16924147	1.00[CEU][hapmap]
rs16924330	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924346	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs16924369	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs16924384	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924484	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924544	1.00[EUR][1000 genomes]
rs2166923	1.00[CEU][hapmap]
rs41468545	1.00[CEU][hapmap]
rs60851084	1.00[EUR][1000 genomes]
rs7001272	1.00[EUR][1000 genomes]
rs7007391	1.00[EUR][1000 genomes]
rs73684880	1.00[EUR][1000 genomes]
rs7821135	1.00[AMR][1000 genomes]
rs7821556	1.00[CEU][hapmap]
rs7826909	1.00[AMR][1000 genomes]
rs9643507	1.00[CEU][hapmap];0.90[YRI][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59876400-59886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
10	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:59877600-59887600	Weak transcription	Gastric	stomach
12	chr8:59879000-59884800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:59879000-59887800	Weak transcription	Dnd41	blood
16	chr8:59879200-59886600	Weak transcription	Osteobl	bone
17	chr8:59879200-59887600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:59879200-59887600	Weak transcription	Fetal Stomach	stomach
19	chr8:59880400-59886400	Weak transcription	Fetal Thymus	thymus
20	chr8:59880600-59887600	Weak transcription	Pancreas	Pancrea
21	chr8:59882400-59885800	Weak transcription	Primary T cells from cord blood	blood
22	chr8:59882600-59886000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:59883000-59884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:59884000-59886200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr8:59884000-59887600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:59884400-59885200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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