Variant report

Variant	rs10504306
Chromosome Location	chr8:60976171-60976172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11984815	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11986212	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11995413	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12680159	1.00[EUR][1000 genomes]
rs16925595	0.81[CHD][hapmap]
rs16925705	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16925714	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2088345	0.81[CHD][hapmap]
rs56700368	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995588	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60974200-60979000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:60975000-60978000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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