Variant report

Variant	rs12680159
Chromosome Location	chr8:61021874-61021875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10504306	1.00[EUR][1000 genomes]
rs11984815	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11986212	1.00[EUR][1000 genomes]
rs11995413	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16925705	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16925714	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56700368	1.00[EUR][1000 genomes]
rs6995588	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61021200-61022600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:61021400-61022400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:61021600-61022000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr8:61021600-61022000	Active TSS	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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