Variant report

Variant	rs10504360
Chromosome Location	chr8:63862337-63862338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10504357	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs10504358	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs10504361	0.95[ASN][1000 genomes]
rs11545078	0.93[ASN][1000 genomes]
rs11985884	0.95[ASN][1000 genomes]
rs11985904	0.95[ASN][1000 genomes]
rs11989852	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs11990678	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs11992253	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11993022	0.95[ASN][1000 genomes]
rs16930045	0.95[ASN][1000 genomes]
rs16930060	0.95[ASN][1000 genomes]
rs16930066	0.93[ASN][1000 genomes]
rs16930072	0.93[ASN][1000 genomes]
rs17192653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194931	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs17279320	0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs17279355	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs17279558	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs1902232	0.91[ASN][1000 genomes]
rs1902233	0.91[ASN][1000 genomes]
rs1902234	0.95[ASN][1000 genomes]
rs1902235	0.95[ASN][1000 genomes]
rs2124294	0.95[ASN][1000 genomes]
rs2353363	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2353364	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2883148	0.95[ASN][1000 genomes]
rs3780127	0.87[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs3780129	0.93[ASN][1000 genomes]
rs4395892	0.95[ASN][1000 genomes]
rs4410897	0.95[ASN][1000 genomes]
rs4419801	0.95[ASN][1000 genomes]
rs55800505	0.93[ASN][1000 genomes]
rs56034470	0.95[ASN][1000 genomes]
rs56213868	0.95[ASN][1000 genomes]
rs56339102	0.95[ASN][1000 genomes]
rs57069084	0.95[ASN][1000 genomes]
rs57776226	0.93[ASN][1000 genomes]
rs58942648	0.95[ASN][1000 genomes]
rs59169978	0.93[ASN][1000 genomes]
rs60751452	0.95[ASN][1000 genomes]
rs60889737	0.93[ASN][1000 genomes]
rs60897253	0.95[ASN][1000 genomes]
rs61326296	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61518338	0.93[ASN][1000 genomes]
rs61629446	0.93[ASN][1000 genomes]
rs62508068	0.84[EUR][1000 genomes]
rs62508088	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62508107	0.93[ASN][1000 genomes]
rs62508108	0.93[ASN][1000 genomes]
rs62508109	0.93[ASN][1000 genomes]
rs62508110	0.93[ASN][1000 genomes]
rs62508111	0.95[ASN][1000 genomes]
rs62508113	0.95[ASN][1000 genomes]
rs62508123	0.93[ASN][1000 genomes]
rs62508154	0.93[ASN][1000 genomes]
rs62508155	0.93[ASN][1000 genomes]
rs62508156	0.91[ASN][1000 genomes]
rs62508157	0.93[ASN][1000 genomes]
rs62508158	0.93[ASN][1000 genomes]
rs62510060	0.93[ASN][1000 genomes]
rs62510061	0.93[ASN][1000 genomes]
rs62510062	0.93[ASN][1000 genomes]
rs62510063	0.93[ASN][1000 genomes]
rs62510064	0.93[ASN][1000 genomes]
rs6472063	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66790008	0.95[ASN][1000 genomes]
rs6983219	0.91[ASN][1000 genomes]
rs6983643	0.95[ASN][1000 genomes]
rs6983864	0.95[ASN][1000 genomes]
rs6983896	0.95[ASN][1000 genomes]
rs6997520	0.95[ASN][1000 genomes]
rs7004087	0.90[JPT][hapmap]
rs7015302	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs72656550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72658344	0.93[ASN][1000 genomes]
rs72658396	0.91[ASN][1000 genomes]
rs72658400	0.91[ASN][1000 genomes]
rs72659813	0.89[ASN][1000 genomes]
rs7834301	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10504360	GGH	cis	Adipose Subcutaneous	GTEx
rs10504360	GGH	cis	Artery Tibial	GTEx
rs10504360	GGH	cis	Nerve Tibial	GTEx
rs10504360	GGH	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63859600-63877800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63860400-63863600	Weak transcription	Right Atrium	heart
3	chr8:63861600-63863800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:63862000-63863800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:63862200-63863200	Weak transcription	Primary hematopoietic stem cells	blood

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