Variant report

Variant	rs10506162
Chromosome Location	chr12:40826514-40826515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40826429-40826566	NONHSAT027728

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1122621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1122863	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11564109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11564245	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1427262	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs1492329	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17128391	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17128401	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17444709	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17529964	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17533153	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17589334	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17599001	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17599042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17599666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17600388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2404834	0.83[CEU][hapmap]
rs4767983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4768291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7309042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73094979	0.83[AFR][1000 genomes]
rs7315186	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7959536	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7960976	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1050076	chr12:40813295-40831595	Enhancers ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1047391	chr12:40817585-40831595	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1039272	chr12:40817585-40841318	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv558604	chr12:40818260-40831569	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv522066	chr12:40820632-40830583	Enhancers	lncRNA	n/a	inside rSNPs	diseases
10	nsv558605	chr12:40821847-40827579	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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