Variant report

Variant	nsv558605
Chromosome Location	chr12:40821847-40827579
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40826180-40826264	NONHSAT027728
2	lnc-MUC19-1	chr12:40826429-40826566	NONHSAT027728
3	lnc-MUC19-1	chr12:40821772-40821895	NONHSAT027728
4	lnc-MUC19-1	chr12:40825428-40825520	NONHSAT027728
5	lnc-MUC19-1	chr12:40823344-40823479	NONHSAT027728
6	lnc-MUC19-1	chr12:40827566-40827715	NONHSAT027728

Extended variants
information (count: 29 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11564170	chr12:40821847-40821848	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs7958987	chr12:40821867-40821868	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs143195891	chr12:40821870-40821871	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs17467284	chr12:40821871-40821872	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs529562667	chr12:40821876-40821877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs73101540	chr12:40821881-40821882	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs11564245	chr12:40823354-40823355	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs564473678	chr12:40823362-40823363	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs577088505	chr12:40823374-40823375	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs79310720	chr12:40823375-40823376	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs555625611	chr12:40823435-40823436	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs573965878	chr12:40823439-40823440	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs150459365	chr12:40823457-40823458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs10506156	chr12:40823474-40823475	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs144344916	chr12:40825459-40825460	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs148369052	chr12:40825463-40825464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs536204522	chr12:40825467-40825468	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs2114567	chr12:40825487-40825488	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs28365246	chr12:40825500-40825501	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs11564125	chr12:40826201-40826202	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs149922242	chr12:40826242-40826243	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs531915573	chr12:40826250-40826251	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs550322832	chr12:40826254-40826255	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs17492292	chr12:40826430-40826431	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs562302271	chr12:40826436-40826437	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs10506162	chr12:40826514-40826515	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs11564104	chr12:40826535-40826536	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs142225703	chr12:40826551-40826552	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs11564110	chr12:40827579-40827580	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Autism	20858243	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Cancer	20164920	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links