Variant report

Variant	rs11564110
Chromosome Location	chr12:40827579-40827580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40827566-40827715	NONHSAT027728

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10506155	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs1072087	0.91[ASN][1000 genomes]
rs10784451	1.00[CHB][hapmap]
rs10784532	1.00[CHB][hapmap]
rs10878258	0.87[CHB][hapmap]
rs10878278	0.93[CHB][hapmap]
rs10878343	1.00[CHB][hapmap]
rs10878356	1.00[CHB][hapmap]
rs10878372	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs11175843	1.00[CHB][hapmap]
rs11175935	1.00[CHB][hapmap]
rs11175958	1.00[CHB][hapmap]
rs11175966	1.00[CHB][hapmap]
rs11176118	1.00[CHB][hapmap]
rs11176153	1.00[CHB][hapmap]
rs11176418	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11176423	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11176584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11564263	0.86[ASN][1000 genomes]
rs11564270	0.86[CEU][hapmap]
rs11613829	0.86[CEU][hapmap]
rs12230935	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12368229	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs17444223	1.00[CHB][hapmap]
rs17444730	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17462055	1.00[CHB][hapmap]
rs2162471	1.00[CHB][hapmap]
rs2723264	1.00[CHB][hapmap]
rs61475818	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7132187	1.00[CHB][hapmap]
rs7134379	0.87[CHB][hapmap]
rs7137173	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs715403	0.92[CHB][hapmap]
rs7303525	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs7311501	0.82[ASN][1000 genomes]
rs7311850	1.00[CHB][hapmap]
rs7966550	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs7969677	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1050076	chr12:40813295-40831595	Enhancers ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1047391	chr12:40817585-40831595	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1039272	chr12:40817585-40841318	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv558604	chr12:40818260-40831569	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv522066	chr12:40820632-40830583	Enhancers	lncRNA	n/a	inside rSNPs	diseases
9	nsv558605	chr12:40821847-40827579	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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