Variant report

Variant	rs11564263
Chromosome Location	chr12:40790698-40790699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10506155	0.93[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap]
rs1072087	0.95[ASN][1000 genomes]
rs10784451	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs10784532	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs10878258	0.80[CHB][hapmap]
rs10878278	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs10878343	0.93[CHB][hapmap]
rs10878356	0.93[CHB][hapmap]
rs10878372	0.93[CHB][hapmap];0.85[CHD][hapmap]
rs11175843	0.93[CHB][hapmap]
rs11175935	0.93[CHB][hapmap]
rs11175958	0.93[CHB][hapmap]
rs11175966	0.93[CHB][hapmap]
rs11176118	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11176153	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs11176386	0.83[ASN][1000 genomes]
rs11176418	0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs11176423	0.95[ASN][1000 genomes]
rs11176584	0.87[ASN][1000 genomes]
rs11564110	0.86[ASN][1000 genomes]
rs12368229	0.93[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs17444223	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs17444730	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs17462055	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs2162471	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs2723264	0.93[CHB][hapmap];0.81[CHD][hapmap]
rs61475818	0.87[ASN][1000 genomes]
rs7132187	0.93[CHB][hapmap];0.80[JPT][hapmap]
rs7134379	0.80[CHB][hapmap]
rs7137173	0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs715403	0.84[CHB][hapmap]
rs7303525	0.93[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap]
rs7311501	0.86[ASN][1000 genomes]
rs7311850	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7966550	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs7969677	0.93[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1047639	chr12:40774370-40804386	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv558599	chr12:40790698-40814452	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11564263	ZCRB1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40787200-40799200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links