Variant report

Variant	rs10878356
Chromosome Location	chr12:40709957-40709958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10506155	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10784451	1.00[CHB][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs10784532	1.00[CHB][hapmap]
rs10878258	0.87[CHB][hapmap]
rs10878278	0.93[CHB][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs10878284	0.93[ASN][1000 genomes]
rs10878343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878372	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11175843	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11175934	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11175935	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11175958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176118	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11176153	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11176418	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12368229	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17444223	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17444730	1.00[CHB][hapmap]
rs17462055	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2162471	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2723264	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7132187	1.00[CHB][hapmap]
rs7134379	0.87[CHB][hapmap]
rs7137173	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes]
rs715403	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs7303525	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7311501	0.81[ASN][1000 genomes]
rs7311850	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7966550	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7969677	1.00[CHB][hapmap];0.87[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1042967	chr12:40629636-40710319	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40640600-40727400	Weak transcription	Spleen	Spleen
2	chr12:40640600-40768200	Weak transcription	Pancreas	Pancrea
3	chr12:40656800-40746400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:40659600-40711200	Weak transcription	Aorta	Aorta
5	chr12:40673400-40713400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:40674400-40760400	Weak transcription	Lung	lung
7	chr12:40677000-40712200	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:40681200-40763000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:40684000-40722600	Weak transcription	Colon Smooth Muscle	Colon
10	chr12:40684000-40722600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr12:40684000-40725000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr12:40687200-40765000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:40692400-40711600	Weak transcription	Adipose Nuclei	Adipose
14	chr12:40695800-40723600	Weak transcription	Brain Angular Gyrus	brain
15	chr12:40699600-40721800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr12:40704400-40723800	Weak transcription	Brain Anterior Caudate	brain
17	chr12:40705600-40722400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr12:40706800-40722800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:40707000-40719000	Weak transcription	A549	lung
20	chr12:40707800-40724400	Strong transcription	Primary B cells from cord blood	blood
21	chr12:40709000-40712800	Strong transcription	Liver	Liver
22	chr12:40709600-40713400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr12:40709600-40721400	Weak transcription	Ovary	ovary
24	chr12:40709800-40710400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:40709800-40711200	Weak transcription	Left Ventricle	heart
26	chr12:40709800-40721600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr12:40709800-40722400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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