Variant report

Variant	rs11176418
Chromosome Location	chr12:40786752-40786753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr12:40786733-40787173	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
MUC19	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10506155	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1072087	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10784451	1.00[CHB][hapmap]
rs10784532	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs10878258	0.80[CHB][hapmap]
rs10878278	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs10878343	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs10878356	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10878372	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs10878434	0.89[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs11175843	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11175935	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11175958	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs11175966	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs11176118	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11176153	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11176386	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11176423	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11176584	0.89[ASN][1000 genomes]
rs11564110	0.88[ASN][1000 genomes]
rs11564263	0.92[ASN][1000 genomes]
rs12230935	0.84[ASN][1000 genomes]
rs12368229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17444223	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17444730	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17462055	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2162471	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2723264	0.93[CHB][hapmap]
rs61475818	0.89[ASN][1000 genomes]
rs7132187	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs7134379	0.87[CHB][hapmap]
rs7137173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs715403	0.84[CHB][hapmap]
rs7303525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7311501	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7311850	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7966550	1.00[CHB][hapmap]
rs7969677	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1047639	chr12:40774370-40804386	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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