Variant report

Variant	rs11176584
Chromosome Location	chr12:40821839-40821840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40821772-40821895	NONHSAT027728

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10506155	1.00[CHB][hapmap]
rs1072087	0.92[ASN][1000 genomes]
rs10784451	1.00[CHB][hapmap]
rs10784532	0.93[CHB][hapmap]
rs10878258	0.80[CHB][hapmap]
rs10878278	0.93[CHB][hapmap]
rs10878343	0.93[CHB][hapmap]
rs10878356	1.00[CHB][hapmap]
rs10878372	1.00[CHB][hapmap]
rs11175843	0.93[CHB][hapmap]
rs11175935	0.93[CHB][hapmap]
rs11175958	0.93[CHB][hapmap]
rs11175966	0.93[CHB][hapmap]
rs11176118	0.93[CHB][hapmap];0.83[YRI][hapmap]
rs11176153	0.93[CHB][hapmap];0.84[YRI][hapmap]
rs11176386	0.80[ASN][1000 genomes]
rs11176418	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11176423	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11564110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11564263	0.87[ASN][1000 genomes]
rs11564270	0.93[CEU][hapmap]
rs11613829	1.00[CEU][hapmap]
rs12230935	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12368229	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs17444223	0.93[CHB][hapmap]
rs17444730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462055	0.93[CHB][hapmap];0.84[YRI][hapmap]
rs2162471	0.93[CHB][hapmap];0.84[YRI][hapmap]
rs2723264	0.93[CHB][hapmap]
rs61475818	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132187	0.93[CHB][hapmap]
rs7134379	0.87[CHB][hapmap]
rs7137173	1.00[CHB][hapmap]
rs715403	0.84[CHB][hapmap]
rs7303525	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs7311501	0.83[ASN][1000 genomes]
rs7311850	0.93[CHB][hapmap]
rs7966550	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7969677	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv558601	chr12:40802840-40824917	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv558602	chr12:40802840-40825487	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv558603	chr12:40809387-40825487	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv470287	chr12:40809387-40825845	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1050076	chr12:40813295-40831595	Enhancers ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1047391	chr12:40817585-40831595	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1039272	chr12:40817585-40841318	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv515583	chr12:40818260-40824917	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv558604	chr12:40818260-40831569	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv522066	chr12:40820632-40830583	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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