Variant report

Variant	rs10507564
Chromosome Location	chr13:49058567-49058568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49057919..49060518-chr13:49066120..49068824,2	K562	blood:

Variant related genes	Relation type
ENSG00000136161	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2097211	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3092871	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49017400-49062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:49018000-49062400	Weak transcription	Fetal Brain Male	brain
3	chr13:49020800-49062000	Weak transcription	Fetal Kidney	kidney
4	chr13:49021200-49058600	Weak transcription	Hela-S3	cervix
5	chr13:49023800-49061000	Weak transcription	Small Intestine	intestine
6	chr13:49023800-49073800	Weak transcription	NH-A	brain
7	chr13:49024000-49059000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:49025600-49066200	Weak transcription	Psoas Muscle	Psoas
9	chr13:49028000-49071000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr13:49029200-49062000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:49030600-49070600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr13:49031600-49066200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:49031800-49059200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr13:49031800-49060200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:49031800-49060600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr13:49031800-49065400	Weak transcription	Brain Substantia Nigra	brain
17	chr13:49032000-49065600	Weak transcription	Brain Anterior Caudate	brain
18	chr13:49032000-49066200	Weak transcription	Colonic Mucosa	Colon
19	chr13:49032400-49062600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:49032400-49066200	Weak transcription	Spleen	Spleen
21	chr13:49032400-49066600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:49032400-49066600	Weak transcription	Ovary	ovary
23	chr13:49032400-49067400	Weak transcription	Pancreas	Pancrea
24	chr13:49032400-49067600	Weak transcription	Gastric	stomach
25	chr13:49032800-49066200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr13:49034400-49073800	Weak transcription	Esophagus	oesophagus
27	chr13:49035200-49073400	Weak transcription	Fetal Intestine Small	intestine
28	chr13:49035600-49065400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr13:49035600-49066000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr13:49035800-49061800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:49035800-49066400	Weak transcription	NHEK	skin
32	chr13:49039800-49062000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr13:49045200-49059200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr13:49049600-49062200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr13:49049800-49060000	Strong transcription	Primary B cells from cord blood	blood
36	chr13:49049800-49066200	Weak transcription	Lung	lung
37	chr13:49050000-49061800	Weak transcription	Fetal Brain Female	brain
38	chr13:49050000-49065600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:49050200-49059200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr13:49051200-49063600	Weak transcription	Primary T cells from cord blood	blood
41	chr13:49051200-49064800	Weak transcription	Brain Hippocampus Middle	brain
42	chr13:49051800-49065400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr13:49052000-49062000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr13:49052800-49063600	Weak transcription	Adipose Nuclei	Adipose
45	chr13:49052800-49064800	Weak transcription	Liver	Liver
46	chr13:49053000-49060400	Weak transcription	HepG2	liver
47	chr13:49053200-49063800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:49053600-49061000	Weak transcription	Fetal Stomach	stomach
49	chr13:49053600-49063200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr13:49053600-49071200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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