Variant report

Variant	rs3092871
Chromosome Location	chr13:48876592-48876593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:48876411-48880767	GM12891	blood:	n/a	n/a
2	POLR2A	chr13:48876214-48877034	HepG2	liver:	n/a	n/a
3	POLR2A	chr13:48876484-48879319	GM12878	blood:	n/a	n/a
4	POLR2A	chr13:48876565-48876925	GM12878	blood:	n/a	n/a
5	POLR2A	chr13:48876526-48879174	PBDE	blood:	n/a	n/a
6	POLR2A	chr13:48876414-48876623	MCF-7	breast:	n/a	n/a
7	POLR2A	chr13:48875820-48878109	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:48806118..48810225-chr13:48876144..48879386,12	MCF-7	breast:
2	chr13:48806544..48809798-chr13:48876519..48878974,4	K562	blood:
3	chr13:48876409..48879041-chr13:48891404..48895274,4	K562	blood:
4	chr13:48851960..48854495-chr13:48874913..48877525,3	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPAR6-1	chr13:48876583-48876628	ENSG00000231473
2	lnc-LPAR6-1	chr13:48876475-48876628	ENSG00000231473
3	lnc-LPAR6-1	chr13:48876475-48876628	NONHSAT033705
4	lnc-LPAR6-1	chr13:48876484-48876628	NONHSAT033703
5	lnc-LPAR6-1	chr13:48876422-48876628	NONHSAT033707

No data

Variant related genes	Relation type
RB1	TF binding region
ENSG00000136156	Chromatin interaction
ENSG00000238086	Chromatin interaction

rs_ID	r²[population]
rs10507564	1.00[YRI][hapmap]
rs17343926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2097211	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs56122091	0.86[AFR][1000 genomes]

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
2	chr13:48866200-48876800	Weak transcription	Pancreas	Pancrea
3	chr13:48866200-48877200	Weak transcription	Left Ventricle	heart
4	chr13:48866600-48876600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr13:48868000-48876800	Weak transcription	Stomach Mucosa	stomach
6	chr13:48870200-48877000	Weak transcription	HSMMtube	muscle
7	chr13:48871000-48877000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:48871200-48877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:48871400-48877000	Weak transcription	Primary B cells from cord blood	blood
10	chr13:48871600-48876600	Weak transcription	Brain Substantia Nigra	brain
11	chr13:48871600-48876800	Weak transcription	HepG2	liver
12	chr13:48871800-48876800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:48871800-48877200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr13:48872000-48876800	Weak transcription	Thymus	Thymus
15	chr13:48873200-48876600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:48873400-48876800	Weak transcription	Primary T cells from cord blood	blood
17	chr13:48873400-48876800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr13:48874000-48876600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr13:48875000-48876800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr13:48875400-48876800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:48876000-48877000	Enhancers	Fetal Thymus	thymus
22	chr13:48876200-48876600	Weak transcription	Fetal Kidney	kidney
23	chr13:48876200-48876600	Weak transcription	Fetal Lung	lung
24	chr13:48876200-48876800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr13:48876200-48877000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:48876200-48877200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr13:48876400-48876600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:48876400-48876600	Enhancers	Hela-S3	cervix
29	chr13:48876400-48876600	Enhancers	K562	blood
30	chr13:48876400-48876800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:48876400-48876800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr13:48876400-48876800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr13:48876400-48876800	Enhancers	Duodenum Mucosa	Duodenum
34	chr13:48876400-48876800	Enhancers	Right Atrium	heart
35	chr13:48876400-48876800	Enhancers	NHEK	skin
36	chr13:48876400-48877000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr13:48876400-48877000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:48876400-48877000	Enhancers	Fetal Intestine Small	intestine
39	chr13:48876400-48877000	Flanking Active TSS	Dnd41	blood
40	chr13:48876400-48877000	Enhancers	HMEC	breast
41	chr13:48876400-48877200	Enhancers	Fetal Heart	heart
42	chr13:48876400-48877200	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr13:48876400-48879200	Active TSS	Stomach Smooth Muscle	stomach

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