Variant report

Variant	rs1050813
Chromosome Location	chr7:100781615-100781616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:52)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:52 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr7:100485453..100487476-chr7:100780458..100783244,2	K562	blood:
2	chr7:100491406..100495036-chr7:100779610..100782610,3	MCF-7	breast:
3	chr7:100769788..100771948-chr7:100781590..100784557,3	MCF-7	breast:
4	chr7:100780042..100783761-chr7:100802307..100806519,5	MCF-7	breast:
5	chr7:100744230..100748590-chr7:100780366..100783718,4	K562	blood:
6	chr7:100720707..100722495-chr7:100781075..100783381,2	K562	blood:
7	chr7:100492341..100495034-chr7:100780506..100782862,2	K562	blood:
8	chr7:100737935..100741233-chr7:100779115..100781948,4	MCF-7	breast:
9	chr7:100780577..100782093-chr7:100785960..100787628,2	K562	blood:
10	chr7:100737789..100738771-chr7:100781346..100782175,4	MCF-7	breast:
11	chr7:100781489..100782147-chr7:100887169..100888105,2	K562	blood:
12	chr7:100779234..100783955-chr7:100785542..100789331,5	K562	blood:
13	chr7:100739541..100742504-chr7:100779535..100781642,2	K562	blood:
14	chr7:100781491..100782159-chr7:100926020..100926564,3	K562	blood:
15	chr7:100779414..100783459-chr7:100798726..100802024,6	MCF-7	breast:
16	chr7:100737739..100738809-chr7:100780869..100782138,8	MCF-7	breast:
17	chr7:100779815..100782415-chr7:100806977..100808912,3	MCF-7	breast:
18	chr7:100779282..100783217-chr7:100806580..100809194,3	MCF-7	breast:
19	chr7:100701345..100704259-chr7:100780586..100783131,2	MCF-7	breast:
20	chr7:100742551..100745856-chr7:100780456..100782799,3	MCF-7	breast:
21	chr7:100742866..100743779-chr7:100781576..100782208,2	MCF-7	breast:
22	chr7:100472483..100474472-chr7:100779872..100781781,2	K562	blood:
23	chr7:100780601..100783229-chr7:100810687..100813674,2	K562	blood:
24	chr7:100780236..100781911-chr7:100835046..100837544,2	K562	blood:
25	chr7:100609417..100610011-chr7:100781393..100782177,2	K562	blood:
26	chr7:100780384..100783181-chr7:100803381..100807251,4	K562	blood:
27	chr7:100750302..100752925-chr7:100778093..100782237,4	MCF-7	breast:
28	chr7:100780498..100782818-chr7:100802310..100804881,2	K562	blood:
29	chr7:100492151..100493007-chr7:100781451..100782108,2	MCF-7	breast:
30	chr7:100769576..100770128-chr7:100781306..100782073,2	MCF-7	breast:
31	chr7:100702699..100703270-chr7:100781234..100782138,2	K562	blood:
32	chr7:100736774..100741131-chr7:100778938..100782147,6	MCF-7	breast:
33	chr7:100728704..100730685-chr7:100780505..100782740,3	K562	blood:
34	chr7:100781461..100784552-chr7:100848282..100850837,3	K562	blood:
35	chr7:100727415..100730609-chr7:100780328..100782151,4	K562	blood:
36	chr7:100720993..100722495-chr7:100780421..100782575,2	K562	blood:
37	chr7:100736915..100741007-chr7:100780476..100783159,3	K562	blood:
38	chr7:100780391..100784635-chr7:100796086..100800882,8	K562	blood:
39	chr7:100779862..100781891-chr7:100797684..100799209,2	K562	blood:
40	chr7:100780501..100783397-chr7:100894230..100897012,3	K562	blood:
41	chr7:100780639..100782466-chr7:100782788..100785369,2	MCF-7	breast:
42	chr7:100741030..100743914-chr7:100780572..100782381,3	K562	blood:
43	chr7:100767265..100771934-chr7:100778904..100783010,6	K562	blood:
44	chr7:100726373..100729644-chr7:100779186..100782906,3	MCF-7	breast:
45	chr7:100748249..100751163-chr7:100779870..100782174,3	K562	blood:
46	chr7:100727419..100730152-chr7:100781603..100783210,3	MCF-7	breast:
47	chr7:100779738..100781911-chr7:100836044..100838178,2	K562	blood:
48	chr7:100737941..100738769-chr7:100781582..100782241,2	K562	blood:
49	chr7:100768262..100771684-chr7:100777874..100781992,4	K562	blood:
50	chr7:100779832..100783181-chr7:100805552..100807331,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000128564	Chromatin interaction
ENSG00000214253	Chromatin interaction
ENSG00000106367	Chromatin interaction
ENSG00000222636	Chromatin interaction
ENSG00000106366	Chromatin interaction
ENSG00000264425	Chromatin interaction
ENSG00000087087	Chromatin interaction
ENSG00000087085	Chromatin interaction
ENSG00000176125	Chromatin interaction
ENSG00000260336	Chromatin interaction
ENSG00000169871	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10215095	1.00[CHB][hapmap]
rs10244048	1.00[CHB][hapmap]
rs10267665	1.00[CHB][hapmap]
rs10269821	1.00[CHB][hapmap]
rs10275377	1.00[CHB][hapmap]
rs1029528	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900	1.00[CHB][hapmap]
rs11544858	1.00[CHB][hapmap]
rs11978776	1.00[CHB][hapmap]
rs13236755	1.00[CHB][hapmap]
rs13241519	1.00[CHB][hapmap]
rs2227676	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227683	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2227714	1.00[CHD][hapmap]
rs34169259	1.00[CHB][hapmap]
rs34532455	1.00[CHB][hapmap]
rs36060097	1.00[CHB][hapmap]
rs6968925	1.00[CHB][hapmap]
rs73178546	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031942	chr7:100606734-100788660	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1833777	chr7:100632790-100800131	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
6	nsv464649	chr7:100739682-100810983	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv607972	chr7:100739682-100810983	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
9	nsv1018841	chr7:100760410-100868299	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
10	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1050813	ZNF3	cis	cerebellum	SCAN

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100770800-100781800	Weak transcription	Gastric	stomach
2	chr7:100770800-100783000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:100772000-100781800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:100772000-100797400	Weak transcription	Right Atrium	heart
5	chr7:100772200-100781800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:100778200-100781800	Genic enhancers	Osteobl	bone
7	chr7:100779200-100783200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:100779400-100787200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:100779800-100781800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:100780200-100781800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:100780200-100782400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:100780200-100782600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:100780600-100781800	Genic enhancers	HSMM	muscle
14	chr7:100780600-100782800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:100780800-100781800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:100780800-100782000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr7:100780800-100782000	Enhancers	Colon Smooth Muscle	Colon
18	chr7:100780800-100782000	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:100780800-100782200	ZNF genes & repeats	Fetal Intestine Large	intestine
20	chr7:100780800-100782200	Enhancers	Small Intestine	intestine
21	chr7:100780800-100782600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:100780800-100782600	Enhancers	Duodenum Mucosa	Duodenum
23	chr7:100781000-100781800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr7:100781000-100781800	Active TSS	Brain Hippocampus Middle	brain
25	chr7:100781000-100781800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr7:100781000-100782000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr7:100781000-100782000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:100781000-100782000	Enhancers	Brain Angular Gyrus	brain
29	chr7:100781000-100782000	Enhancers	Left Ventricle	heart
30	chr7:100781000-100782000	Enhancers	Rectal Smooth Muscle	rectum
31	chr7:100781000-100782400	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:100781000-100782400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:100781000-100782600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr7:100781200-100781800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr7:100781200-100781800	Enhancers	Right Ventricle	heart
36	chr7:100781200-100781800	Enhancers	Stomach Mucosa	stomach
37	chr7:100781200-100781800	Enhancers	Stomach Smooth Muscle	stomach
38	chr7:100781200-100782000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr7:100781200-100782000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr7:100781200-100782000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:100781200-100782000	Enhancers	Fetal Heart	heart
42	chr7:100781200-100782000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr7:100781200-100782000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr7:100781200-100782400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr7:100781200-100782400	Enhancers	Fetal Intestine Small	intestine
46	chr7:100781200-100782400	Enhancers	Lung	lung
47	chr7:100781400-100781800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:100781400-100781800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:100781400-100781800	Enhancers	Ovary	ovary
50	chr7:100781400-100782000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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