Variant report

Variant	rs6968925
Chromosome Location	chr7:100920771-100920772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:100887613..100889950-chr7:100920424..100922937,2	MCF-7	breast:
2	chr7:100888574..100891028-chr7:100920575..100922314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214253	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10267665	1.00[CHB][hapmap]
rs10269821	1.00[CHB][hapmap]
rs10275377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1050813	1.00[CHB][hapmap]
rs10900	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11544858	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11767356	1.00[CHB][hapmap]
rs11978776	1.00[CHB][hapmap]
rs13223799	1.00[ASN][1000 genomes]
rs13225720	1.00[ASN][1000 genomes]
rs13229048	1.00[CHB][hapmap]
rs13234919	1.00[ASN][1000 genomes]
rs13236755	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13236818	1.00[ASN][1000 genomes]
rs13237170	1.00[ASN][1000 genomes]
rs13238579	1.00[CHB][hapmap]
rs13240188	1.00[ASN][1000 genomes]
rs13240202	1.00[ASN][1000 genomes]
rs13241096	1.00[ASN][1000 genomes]
rs13241519	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13241528	1.00[ASN][1000 genomes]
rs13243964	1.00[ASN][1000 genomes]
rs1859639	1.00[CHB][hapmap]
rs2227683	1.00[CHB][hapmap]
rs2410815	1.00[ASN][1000 genomes]
rs2410818	1.00[ASN][1000 genomes]
rs28378079	1.00[ASN][1000 genomes]
rs28592167	1.00[ASN][1000 genomes]
rs34048830	1.00[ASN][1000 genomes]
rs34077348	1.00[ASN][1000 genomes]
rs34169259	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34170365	1.00[ASN][1000 genomes]
rs34306578	1.00[ASN][1000 genomes]
rs34331244	1.00[ASN][1000 genomes]
rs34434188	1.00[ASN][1000 genomes]
rs34522084	1.00[ASN][1000 genomes]
rs34530598	1.00[ASN][1000 genomes]
rs34532455	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34541954	1.00[ASN][1000 genomes]
rs34579827	1.00[ASN][1000 genomes]
rs34679185	1.00[ASN][1000 genomes]
rs34714336	1.00[ASN][1000 genomes]
rs34872936	1.00[ASN][1000 genomes]
rs35401614	1.00[ASN][1000 genomes]
rs35427616	1.00[ASN][1000 genomes]
rs35614350	1.00[ASN][1000 genomes]
rs35642062	1.00[ASN][1000 genomes]
rs35653054	1.00[ASN][1000 genomes]
rs35710113	1.00[ASN][1000 genomes]
rs35724850	1.00[ASN][1000 genomes]
rs35751380	1.00[ASN][1000 genomes]
rs35757856	1.00[ASN][1000 genomes]
rs35785259	1.00[ASN][1000 genomes]
rs35811165	1.00[ASN][1000 genomes]
rs35835570	1.00[ASN][1000 genomes]
rs36005187	1.00[ASN][1000 genomes]
rs36060097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs36079227	1.00[ASN][1000 genomes]
rs56730418	1.00[ASN][1000 genomes]
rs60697114	1.00[ASN][1000 genomes]
rs66621600	1.00[ASN][1000 genomes]
rs66711003	1.00[ASN][1000 genomes]
rs67002599	1.00[ASN][1000 genomes]
rs67502950	1.00[ASN][1000 genomes]
rs67736913	1.00[ASN][1000 genomes]
rs67922522	1.00[ASN][1000 genomes]
rs67927345	1.00[ASN][1000 genomes]
rs68015521	1.00[ASN][1000 genomes]
rs6949868	1.00[CHB][hapmap]
rs6956534	1.00[CHB][hapmap]
rs6963224	1.00[CHB][hapmap]
rs6968930	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6977536	1.00[CHB][hapmap]
rs71540926	1.00[ASN][1000 genomes]
rs71557300	1.00[ASN][1000 genomes]
rs71557302	1.00[ASN][1000 genomes]
rs71559403	1.00[ASN][1000 genomes]
rs71559406	1.00[ASN][1000 genomes]
rs73410736	1.00[ASN][1000 genomes]
rs7781222	1.00[ASN][1000 genomes]
rs7791799	1.00[ASN][1000 genomes]
rs868145	1.00[ASN][1000 genomes]
rs9691191	1.00[ASN][1000 genomes]
rs9692578	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	nsv1023393	chr7:100904333-101102046	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv970917	chr7:100907928-100928609	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100914600-100921400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:100916200-100924800	Strong transcription	Liver	Liver
3	chr7:100916600-100925800	Weak transcription	Brain Angular Gyrus	brain
4	chr7:100917200-100932800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:100917400-100926000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:100918200-100920800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:100919200-100926000	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr7:100919600-100935200	Weak transcription	Right Atrium	heart
9	chr7:100919800-100920800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:100920600-100925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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