Variant report

Variant	rs10508278
Chromosome Location	chr10:4263255-4263256
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10508279	0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs10751964	0.90[EUR][1000 genomes]
rs10795144	0.90[EUR][1000 genomes]
rs10795145	0.90[EUR][1000 genomes]
rs10795146	0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs10904203	0.88[AMR][1000 genomes]
rs10904205	0.88[EUR][1000 genomes]
rs10904207	0.90[EUR][1000 genomes]
rs10904208	0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs10904210	0.88[EUR][1000 genomes]
rs11252402	0.89[EUR][1000 genomes]
rs1535445	0.86[EUR][1000 genomes]
rs1535446	0.86[EUR][1000 genomes]
rs1998328	0.81[ASN][1000 genomes]
rs2025163	0.86[EUR][1000 genomes]
rs2146056	0.88[EUR][1000 genomes]
rs6601825	0.90[EUR][1000 genomes]
rs7081360	0.85[EUR][1000 genomes]
rs725697	0.81[ASN][1000 genomes]
rs7475965	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10508278	KLF6	cis	parietal	SCAN
rs10508278	IDI2	cis	parietal	SCAN
rs10508278	IL2RA	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4256000-4263400	Weak transcription	HSMM	muscle
2	chr10:4257400-4282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:4260400-4269200	Weak transcription	Aorta	Aorta
4	chr10:4260600-4263400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:4263200-4263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:4263200-4263600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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