Variant report

Variant	rs10795144
Chromosome Location	chr10:4285906-4285907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:4285836-4286209	Hela-S3	cervix:	n/a	n/a
2	JUN	chr10:4285765-4286224	Hela-S3	cervix:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
3	FOSL2	chr10:4285905-4286303	MCF-7	breast:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
4	JUND	chr10:4285647-4286474	SK-N-SH	brain:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
5	EP300	chr10:4285810-4286257	SK-N-SH_RA	brain:	n/a	chr10:4286082-4286091 chr10:4286163-4286177
6	RAD21	chr10:4282809-4286354	IMR90	lung:	n/a	chr10:4284444-4284456
7	TCF12	chr10:4285575-4286539	SK-N-SH	brain:	n/a	n/a
8	JUND	chr10:4285704-4286384	HCT-116	colon:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
9	GATA3	chr10:4285556-4286545	SK-N-SH	brain:	n/a	n/a
10	RXRA	chr10:4285673-4286492	SK-N-SH	brain:	n/a	chr10:4286024-4286037 chr10:4286024-4286037
11	NFIC	chr10:4285622-4286514	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr10:4282798-4286338	SK-N-SH	brain:	n/a	n/a
13	GATA3	chr10:4282642-4286705	SK-N-SH	brain:	n/a	n/a
14	POLR2A	chr10:4284306-4286222	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr10:4285756-4286113	SK-N-SH	brain:	n/a	n/a
16	RAD21	chr10:4285826-4286191	SK-N-SH_RA	brain:	n/a	n/a
17	FOSL1	chr10:4285642-4286398	HCT-116	colon:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
18	EP300	chr10:4285570-4286501	SK-N-SH	brain:	n/a	chr10:4286082-4286091 chr10:4285643-4285652 chr10:4286163-4286177
19	FOS	chr10:4285827-4286285	MCF10A-Er-Src	breast:	n/a	chr10:4286032-4286043 chr10:4286081-4286092 chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
20	RXRA	chr10:4285777-4286324	SK-N-SH	brain:	n/a	chr10:4286024-4286037 chr10:4286024-4286037
21	STAT3	chr10:4285864-4286252	MCF10A-Er-Src	breast:	n/a	n/a
22	FOSL2	chr10:4285849-4286230	MCF-7	breast:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
23	ZBTB33	chr10:4285755-4286368	SK-N-SH	brain:	n/a	n/a
24	MEF2A	chr10:4285651-4286561	SK-N-SH	brain:	n/a	chr10:4286459-4286476 chr10:4286458-4286479 chr10:4286083-4286091 chr10:4286463-4286472 chr10:4286122-4286137 chr10:4286460-4286474 chr10:4286123-4286134 chr10:4286462-4286473
25	TCF12	chr10:4282610-4286517	SK-N-SH	brain:	n/a	n/a
26	JUND	chr10:4285631-4286382	SK-N-SH	brain:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
27	TEAD4	chr10:4285671-4286411	SK-N-SH	brain:	n/a	n/a
28	TEAD4	chr10:4285612-4286519	SK-N-SH	brain:	n/a	n/a
29	FOSL1	chr10:4285692-4286280	HCT-116	colon:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
30	STAT3	chr10:4285531-4286324	MCF10A-Er-Src	breast:	n/a	n/a
31	PBX3	chr10:4285650-4286359	SK-N-SH	brain:	n/a	n/a
32	SP1	chr10:4285712-4286404	HCT-116	colon:	n/a	n/a
33	PBX3	chr10:4285656-4286488	SK-N-SH	brain:	n/a	n/a
34	FOSL2	chr10:4285627-4286350	A549	lung:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
35	POLR2A	chr10:4285762-4286196	U87	brain:	n/a	n/a
36	SP1	chr10:4285759-4286237	A549	lung:	n/a	n/a
37	JUND	chr10:4285719-4286355	HCT-116	colon:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
38	POLR2A	chr10:4282897-4286367	HUVEC	blood vessel:	n/a	n/a
39	JUN	chr10:4285807-4286290	HUVEC	blood vessel:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
40	TAF1	chr10:4285905-4286143	SK-N-SH	brain:	n/a	n/a
41	CEBPB	chr10:4285804-4286368	HCT-116	colon:	n/a	n/a
42	MEF2A	chr10:4285564-4286425	SK-N-SH	brain:	n/a	chr10:4286083-4286091 chr10:4286122-4286137 chr10:4286123-4286134
43	EP300	chr10:4285716-4286487	SK-N-SH	brain:	n/a	chr10:4286082-4286091 chr10:4286163-4286177
44	EP300	chr10:4285736-4286304	Hela-S3	cervix:	n/a	chr10:4286082-4286091 chr10:4286163-4286177
45	FOS	chr10:4285783-4286317	MCF10A-Er-Src	breast:	n/a	chr10:4286032-4286043 chr10:4286081-4286092 chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
46	POLR2A	chr10:4285383-4286150	MCF10A-Er-Src	breast:	n/a	n/a
47	E2F4	chr10:4285828-4286219	MCF10A-Er-Src	breast:	n/a	n/a
48	SP1	chr10:4285737-4286260	HCT-116	colon:	n/a	n/a
49	FOSL2	chr10:4285799-4286280	SK-N-SH	brain:	n/a	chr10:4286034-4286042 chr10:4286033-4286043 chr10:4286084-4286091 chr10:4286033-4286043 chr10:4286083-4286091 chr10:4286033-4286043 chr10:4286083-4286091
50	RAD21	chr10:4285875-4286124	SK-N-SH_RA	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF6-7	chr10:4285696-4285957	XLOC_008700
2	lnc-KLF6-7	chr10:4285696-4285981	XLOC_008700

Variant related genes	Relation type
LINC00702	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1000781	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10508278	0.90[EUR][1000 genomes]
rs10508279	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10795145	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10795146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904205	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904206	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904207	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904208	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904210	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252402	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1535445	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1535446	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1535448	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1923391	0.91[AFR][1000 genomes]
rs2025163	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2065089	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146056	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4881303	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6601824	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6601825	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081360	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7475965	0.90[EUR][1000 genomes]
rs927411	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1051538	chr10:4274395-4291004	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4276000-4292200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4282000-4286200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:4282200-4286400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:4282800-4286000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:4282800-4286000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:4282800-4286600	Active TSS	Stomach Smooth Muscle	stomach
7	chr10:4282800-4287200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:4283000-4286000	Active TSS	Aorta	Aorta
9	chr10:4283200-4286000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:4283200-4286600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:4283200-4286800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:4283600-4286400	Flanking Active TSS	HUVEC	blood vessel
13	chr10:4283600-4287400	Enhancers	Hela-S3	cervix
14	chr10:4283800-4286000	Active TSS	Right Ventricle	heart
15	chr10:4284000-4286000	Flanking Active TSS	NHEK	skin
16	chr10:4284200-4286000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr10:4284200-4286000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:4284200-4286000	Flanking Active TSS	Osteobl	bone
19	chr10:4284200-4287800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:4284600-4287400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:4284800-4286600	Enhancers	A549	lung
22	chr10:4285000-4286000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:4285000-4286000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:4285000-4287000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:4285200-4286000	Active TSS	Right Atrium	heart
26	chr10:4285200-4286200	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr10:4285200-4286200	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr10:4285200-4286400	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:4285200-4286600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:4285200-4286600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:4285200-4288200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:4285200-4288600	Weak transcription	Fetal Thymus	thymus
33	chr10:4285200-4288800	Weak transcription	Ovary	ovary
34	chr10:4285200-4291800	Weak transcription	Psoas Muscle	Psoas
35	chr10:4285400-4286000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:4285400-4286000	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr10:4285400-4286000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:4285400-4286800	Enhancers	Dnd41	blood
39	chr10:4285400-4288200	Weak transcription	Left Ventricle	heart
40	chr10:4285400-4288600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:4285600-4286000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:4285600-4286000	Active TSS	HMEC	breast
43	chr10:4285600-4286000	Active TSS	NH-A	brain
44	chr10:4285600-4286000	Active TSS	NHDF-Ad	bronchial
45	chr10:4285600-4286400	Active TSS	NHLF	lung
46	chr10:4285600-4296200	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:4285800-4286000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:4285800-4286000	Flanking Active TSS	Fetal Heart	heart
49	chr10:4285800-4286000	Active TSS	HSMMtube	muscle
50	chr10:4285800-4286200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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