Variant report

Variant	rs10508304
Chromosome Location	chr10:6356869-6356870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6337812..6339810-chr10:6355457..6358374,2	MCF-7	breast:
2	chr10:6355714..6359747-chr10:6439655..6444608,4	MCF-7	breast:
3	chr10:6341160..6345288-chr10:6356730..6359741,4	MCF-7	breast:
4	chr10:6338687..6345306-chr10:6353335..6358938,10	MCF-7	breast:
5	chr10:6241505..6246812-chr10:6355218..6363190,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11813173	0.89[AFR][1000 genomes]
rs12415930	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1535694	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2021950	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2021951	0.88[EUR][1000 genomes]
rs2224781	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs750120	0.98[ASN][1000 genomes]
rs764189	0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7917326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923615	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6349400-6360200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:6349400-6369800	Weak transcription	Adipose Nuclei	Adipose
3	chr10:6353800-6357400	Enhancers	Fetal Lung	lung
4	chr10:6354000-6362400	Weak transcription	Aorta	Aorta
5	chr10:6354200-6369200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:6354400-6357600	Enhancers	Fetal Intestine Small	intestine
7	chr10:6355000-6363600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:6355400-6357200	Enhancers	Esophagus	oesophagus
9	chr10:6355400-6357400	Enhancers	Fetal Intestine Large	intestine
10	chr10:6355800-6357200	Enhancers	Pancreas	Pancrea
11	chr10:6355800-6361200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:6356000-6357400	Flanking Active TSS	A549	lung
13	chr10:6356000-6388200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:6356200-6377600	Weak transcription	Ovary	ovary
15	chr10:6356400-6357200	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr10:6356600-6357000	Enhancers	Brain Substantia Nigra	brain
17	chr10:6356600-6357200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:6356600-6357200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:6356600-6357200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr10:6356600-6357200	Enhancers	HSMM	muscle
21	chr10:6356800-6357000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:6356800-6357000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr10:6356800-6357200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:6356800-6357200	Flanking Active TSS	Stomach Mucosa	stomach
25	chr10:6356800-6357400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:6356800-6357400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:6356800-6357400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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