Variant report

Variant	rs764189
Chromosome Location	chr10:6356210-6356211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6337812..6339810-chr10:6355457..6358374,2	MCF-7	breast:
2	chr10:6355714..6359747-chr10:6439655..6444608,4	MCF-7	breast:
3	chr10:6351716..6354358-chr10:6354404..6356505,2	MCF-7	breast:
4	chr10:6338687..6345306-chr10:6353335..6358938,10	MCF-7	breast:
5	chr10:6241505..6246812-chr10:6355218..6363190,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10508304	0.89[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10795990	0.86[ASN][1000 genomes]
rs10795992	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10906232	0.88[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2021950	0.89[ASW][hapmap];0.90[CHD][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs2387396	0.82[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7096921	0.82[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs750120	0.88[ASN][1000 genomes]
rs7901352	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7917326	0.89[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6342800-6356600	Weak transcription	Brain Substantia Nigra	brain
2	chr10:6349400-6360200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:6349400-6369800	Weak transcription	Adipose Nuclei	Adipose
4	chr10:6353800-6357400	Enhancers	Fetal Lung	lung
5	chr10:6354000-6362400	Weak transcription	Aorta	Aorta
6	chr10:6354200-6356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:6354200-6369200	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:6354400-6357600	Enhancers	Fetal Intestine Small	intestine
9	chr10:6354600-6356800	Enhancers	Stomach Mucosa	stomach
10	chr10:6355000-6356800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:6355000-6363600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:6355400-6357200	Enhancers	Esophagus	oesophagus
13	chr10:6355400-6357400	Enhancers	Fetal Intestine Large	intestine
14	chr10:6355600-6356600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:6355800-6356400	Enhancers	Duodenum Mucosa	Duodenum
16	chr10:6355800-6356600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr10:6355800-6357200	Enhancers	Pancreas	Pancrea
18	chr10:6355800-6361200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:6356000-6357400	Flanking Active TSS	A549	lung
20	chr10:6356000-6388200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:6356200-6356600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:6356200-6356600	Weak transcription	HSMM	muscle
23	chr10:6356200-6377600	Weak transcription	Ovary	ovary

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