Variant report

Variant	rs10508859
Chromosome Location	chr10:37908884-37908885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10734026	1.00[ASN][1000 genomes]
rs12265979	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12414999	0.83[AFR][1000 genomes]
rs16937569	0.81[EUR][1000 genomes]
rs2145305	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295647	0.85[EUR][1000 genomes]
rs3920554	1.00[ASN][1000 genomes]
rs55637824	0.90[EUR][1000 genomes]
rs56343162	0.91[EUR][1000 genomes]
rs56905472	0.81[EUR][1000 genomes]
rs57430818	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58379893	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58906790	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67011531	0.81[EUR][1000 genomes]
rs68087889	0.83[ASN][1000 genomes]
rs72789877	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72789892	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72789899	0.90[EUR][1000 genomes]
rs72791703	0.86[EUR][1000 genomes]
rs9418274	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv971847	chr10:37892555-37920952	Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv971846	chr10:37892555-37937603	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10508859	ZNF25	cis	cerebellum	SCAN
rs10508859	ZNF25	cis	parietal	SCAN
rs10508859	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL
rs10508859	ZNF37A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37908600-37909000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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