Variant report

Variant	rs68087889
Chromosome Location	chr10:38024065-38024066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38022553..38025256-chr10:38025509..38028052,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10508859	0.83[ASN][1000 genomes]
rs10508861	0.88[EUR][1000 genomes]
rs10734026	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11011371	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12243792	0.87[EUR][1000 genomes]
rs12265979	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12412402	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12413854	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16937571	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2145305	0.83[ASN][1000 genomes]
rs3739992	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3920554	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55738335	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55742761	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs57430818	0.90[ASN][1000 genomes]
rs58379893	0.86[ASN][1000 genomes]
rs58906790	0.91[ASN][1000 genomes]
rs59486180	0.87[EUR][1000 genomes]
rs67276704	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7068885	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72789877	0.91[ASN][1000 genomes]
rs72789892	0.99[ASN][1000 genomes]
rs72791720	0.90[ASN][1000 genomes]
rs72791726	0.86[ASN][1000 genomes]
rs72791727	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv947607	chr10:38021929-38040760	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38021400-38024400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:38022200-38037000	Weak transcription	HSMM	muscle
3	chr10:38023400-38024200	Enhancers	NHLF	lung
4	chr10:38023400-38024600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:38023400-38026000	Enhancers	Placenta	Placenta
6	chr10:38023600-38024800	Enhancers	A549	lung
7	chr10:38023800-38024800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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