Variant report

Variant	rs55742761
Chromosome Location	chr10:38093544-38093545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38092192..38094710-chr10:38111605..38114587,2	K562	blood:
2	chr10:38092650..38094653-chr10:38146551..38148241,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236514	Chromatin interaction
ENSG00000198105	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508861	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11011371	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1208578	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1208621	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12243792	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12265979	0.92[EUR][1000 genomes]
rs12412402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12413854	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16937569	0.98[ASN][1000 genomes]
rs16937571	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1735625	0.82[EUR][1000 genomes]
rs17608725	0.81[EUR][1000 genomes]
rs1779073	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs200907	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs200909	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs200913	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs200914	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs200941	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2208317	0.80[ASN][1000 genomes]
rs2474553	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2489166	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2738221	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2753883	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs289640	0.80[ASN][1000 genomes]
rs3739992	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55738335	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56905472	0.98[ASN][1000 genomes]
rs59486180	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67011531	0.98[ASN][1000 genomes]
rs67276704	0.82[EUR][1000 genomes]
rs68087889	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7068885	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766362	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9418311	0.81[EUR][1000 genomes]
rs9787710	0.80[ASN][1000 genomes]
rs995141	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv982874	chr10:38092839-38111415	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs55742761	ZNF37A	Cis_1M	lymphoblastoid	RTeQTL
rs55742761	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38081200-38097200	Weak transcription	Aorta	Aorta
2	chr10:38085400-38100800	Weak transcription	Left Ventricle	heart
3	chr10:38087400-38094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:38090400-38101000	Weak transcription	HepG2	liver
5	chr10:38090800-38102200	Weak transcription	Brain Angular Gyrus	brain
6	chr10:38091200-38094000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:38091400-38094000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:38091800-38102400	Weak transcription	Brain Anterior Caudate	brain
9	chr10:38092600-38094200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:38092600-38105000	Weak transcription	Pancreas	Pancrea
11	chr10:38093000-38095200	Weak transcription	Adipose Nuclei	Adipose
12	chr10:38093000-38095400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:38093000-38098800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:38093000-38102200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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