Variant report

Variant	rs11011371
Chromosome Location	chr10:38087166-38087167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38082238..38084257-chr10:38085270..38087411,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508861	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1208619	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1208621	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12243792	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12265979	0.87[EUR][1000 genomes]
rs12412402	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12413854	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16937571	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1735625	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779073	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs200907	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs200909	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs200913	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs200914	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs200941	0.80[EUR][1000 genomes]
rs2738221	0.82[EUR][1000 genomes]
rs2753883	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3739992	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55738335	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55742761	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59486180	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67276704	0.86[EUR][1000 genomes]
rs68087889	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7068885	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11011371	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL
rs11011371	ZNF37A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38081200-38092000	Weak transcription	Ovary	ovary
2	chr10:38081200-38092200	Weak transcription	Pancreas	Pancrea
3	chr10:38081200-38097200	Weak transcription	Aorta	Aorta
4	chr10:38084000-38090600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38084400-38092200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:38085000-38088800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr10:38085400-38100800	Weak transcription	Left Ventricle	heart
8	chr10:38086000-38091800	Weak transcription	Stomach Smooth Muscle	stomach

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