Variant report

Variant	rs10509591
Chromosome Location	chr10:91885921-91885922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748540	0.80[ASN][1000 genomes]
rs10785940	0.80[ASN][1000 genomes]
rs1329154	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1360116	0.85[EUR][1000 genomes]
rs17091255	0.86[ASN][1000 genomes]
rs17091258	0.85[ASN][1000 genomes]
rs17091272	0.82[ASN][1000 genomes]
rs17091294	0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2148022	0.80[ASN][1000 genomes]
rs6583692	0.80[JPT][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs7072726	0.80[ASN][1000 genomes]
rs72822710	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73381489	0.82[ASN][1000 genomes]
rs750910	0.87[ASN][1000 genomes]
rs750911	0.88[ASN][1000 genomes]
rs985602	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs985603	0.80[JPT][hapmap]
rs985604	0.80[JPT][hapmap];0.90[TSI][hapmap]
rs999901	0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs999902	0.93[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv519094	chr10:91769945-91927196	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv895884	chr10:91861413-91959144	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91884200-91886600	Enhancers	Brain Germinal Matrix	brain
2	chr10:91884400-91886400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:91884600-91886000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:91884600-91886600	Enhancers	Fetal Stomach	stomach
5	chr10:91884600-91886600	Enhancers	NH-A	brain
6	chr10:91884800-91886200	Enhancers	Fetal Brain Female	brain
7	chr10:91884800-91886400	Enhancers	Brain Angular Gyrus	brain
8	chr10:91884800-91886400	Enhancers	Brain Anterior Caudate	brain
9	chr10:91885000-91886000	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:91885000-91886200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91885000-91886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:91885000-91886400	Enhancers	Fetal Lung	lung
13	chr10:91885000-91886400	Enhancers	NHLF	lung
14	chr10:91885000-91887200	Enhancers	Brain Substantia Nigra	brain
15	chr10:91885200-91886000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:91885200-91886000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr10:91885200-91886000	Enhancers	Fetal Brain Male	brain
18	chr10:91885200-91886000	Enhancers	HSMM	muscle
19	chr10:91885200-91886200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:91885200-91886200	Enhancers	Aorta	Aorta
21	chr10:91885200-91886200	Enhancers	HMEC	breast
22	chr10:91885200-91886200	Enhancers	HSMMtube	muscle
23	chr10:91885200-91886400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:91885400-91886000	Enhancers	Right Atrium	heart
25	chr10:91885400-91886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:91885400-91891400	Weak transcription	Psoas Muscle	Psoas
27	chr10:91885600-91886000	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr10:91885600-91886200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr10:91885600-91886600	Enhancers	Osteobl	bone
30	chr10:91885800-91886200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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