Variant report

Variant	rs10509665
Chromosome Location	chr10:95528442-95528443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95527947..95530027-chr10:95533971..95535775,2	MCF-7	breast:
2	chr10:95520555..95522650-chr10:95526839..95529354,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11187648	0.82[ASN][1000 genomes]
rs11594268	0.95[ASN][1000 genomes]
rs2019133	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3781267	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs3781268	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs3781270	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4919507	0.93[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520600-95529400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:95521200-95533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:95523200-95529800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:95523400-95529400	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:95524000-95529600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:95526000-95530400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:95526600-95533000	Enhancers	Liver	Liver
10	chr10:95527200-95529000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:95527400-95529800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:95527400-95530000	Enhancers	Brain Anterior Caudate	brain
13	chr10:95527600-95529400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:95527600-95530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:95527800-95528600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:95527800-95529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:95528000-95529400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:95528000-95529600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:95528000-95529600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:95528000-95529800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:95528000-95530400	Weak transcription	A549	lung
22	chr10:95528200-95535200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:95528400-95529600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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