Variant report

Variant	rs3781268
Chromosome Location	chr10:95533467-95533468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95522144..95525198-chr10:95532040..95536746,5	MCF-7	breast:
2	chr10:95500956..95502830-chr10:95532410..95535130,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10509665	0.80[EUR][1000 genomes]
rs10882332	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10882333	0.91[ASN][1000 genomes]
rs11187664	0.89[ASN][1000 genomes]
rs11813787	0.89[ASN][1000 genomes]
rs3781267	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781270	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4917917	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs4919507	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919508	0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:95521200-95533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:95528200-95535200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:95530000-95536600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:95530600-95536600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:95531200-95535000	Weak transcription	A549	lung
13	chr10:95533000-95533800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:95533000-95533800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:95533000-95534000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:95533000-95534000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:95533000-95534000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:95533000-95534000	Enhancers	Adipose Nuclei	Adipose
19	chr10:95533000-95534000	Flanking Active TSS	Liver	Liver
20	chr10:95533000-95534200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:95533000-95535000	Enhancers	Brain Anterior Caudate	brain
22	chr10:95533400-95533800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:95533400-95533800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:95533400-95534000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:95533400-95534000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:95533400-95534000	Enhancers	Osteobl	bone

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