Variant report

Variant	rs11813787
Chromosome Location	chr10:95536894-95536895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:95536772-95537198	MCF-7	breast:	n/a	n/a
2	POLR2A	chr10:95536466-95537310	H1-neurons	neurons:	n/a	n/a
3	JUND	chr10:95536661-95537285	T-47D	breast:	n/a	n/a
4	GATA3	chr10:95536586-95537407	MCF-7	breast:	n/a	n/a
5	GATA3	chr10:95536666-95537072	T-47D	breast:	n/a	n/a
6	TCF7L2	chr10:95536773-95537315	MCF-7	breast:	n/a	chr10:95537150-95537164

Variant related genes	Relation type
LGI1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10882332	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781267	0.90[ASN][1000 genomes]
rs3781268	0.89[ASN][1000 genomes]
rs4919507	0.89[ASN][1000 genomes]
rs4919508	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1840973	chr10:95534265-95552953	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
2	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:95534000-95538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:95535000-95554600	Weak transcription	Brain Anterior Caudate	brain
8	chr10:95536000-95537400	Enhancers	Liver	Liver
9	chr10:95536400-95537000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:95536400-95537200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:95536400-95537200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:95536400-95537200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:95536400-95537600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:95536400-95538600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:95536600-95537000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:95536600-95537000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr10:95536600-95537000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:95536600-95537000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:95536600-95537000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:95536600-95537000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:95536600-95537200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:95536600-95537200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr10:95536600-95537200	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:95536600-95537200	Enhancers	HSMMtube	muscle
25	chr10:95536600-95537200	Bivalent Enhancer	Osteobl	bone
26	chr10:95536800-95537000	Enhancers	A549	lung
27	chr10:95536800-95537200	Enhancers	Cortex derived primary cultured neurospheres	brain

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