Variant report

Variant	rs10510006
Chromosome Location	chr10:116260627-116260628
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116259184..116261676-chr10:116284926..116286674,2	MCF-7	breast:
2	chr10:116260217..116261797-chr10:116580034..116582863,2	MCF-7	breast:
3	chr10:116255855..116258207-chr10:116259480..116261802,2	MCF-7	breast:
4	chr10:116246183..116247727-chr10:116258173..116260732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11196761	0.96[ASN][1000 genomes]
rs11196762	0.86[JPT][hapmap]
rs11196765	0.85[JPT][hapmap]
rs17091958	0.82[AMR][1000 genomes]
rs17091963	0.85[AMR][1000 genomes]
rs73353754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910989	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
4	chr10:116225600-116278800	Weak transcription	HSMM	muscle
5	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
6	chr10:116249600-116264800	Weak transcription	Pancreas	Pancrea
7	chr10:116250200-116264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:116250200-116265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:116252000-116267200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:116252200-116264800	Weak transcription	Brain Substantia Nigra	brain
11	chr10:116252400-116263800	Weak transcription	Hela-S3	cervix
12	chr10:116252600-116262800	Weak transcription	Psoas Muscle	Psoas
13	chr10:116252600-116264800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:116252600-116264800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116252600-116264800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:116253200-116264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:116253200-116264800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:116255400-116263000	Weak transcription	Fetal Lung	lung
19	chr10:116255400-116264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:116255400-116264600	Weak transcription	Fetal Kidney	kidney
21	chr10:116255800-116262600	Weak transcription	Fetal Heart	heart
22	chr10:116256000-116264600	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:116256800-116263600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:116256800-116264600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:116256800-116264800	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:116258000-116261800	Enhancers	Small Intestine	intestine
27	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
28	chr10:116258200-116261200	Enhancers	Fetal Intestine Large	intestine
29	chr10:116258200-116263200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:116258400-116261000	Enhancers	Fetal Intestine Small	intestine
31	chr10:116258600-116260800	Enhancers	Duodenum Mucosa	Duodenum
32	chr10:116258600-116261000	Enhancers	HMEC	breast
33	chr10:116258600-116261200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr10:116258600-116261200	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr10:116258800-116260800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:116258800-116260800	Enhancers	NHEK	skin
37	chr10:116258800-116261000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:116258800-116261000	Enhancers	Colonic Mucosa	Colon
39	chr10:116258800-116263200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:116259000-116263000	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:116259200-116261200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr10:116259400-116260800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr10:116259400-116261000	Enhancers	Esophagus	oesophagus
44	chr10:116259400-116261600	Weak transcription	HUVEC	blood vessel
45	chr10:116259400-116263200	Enhancers	Primary B cells from peripheral blood	blood
46	chr10:116259400-116263200	Enhancers	Ovary	ovary
47	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:116259800-116261000	Enhancers	HepG2	liver
49	chr10:116259800-116261800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr10:116259800-116262000	Enhancers	Primary B cells from cord blood	blood

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