Variant report

Variant	rs7910989
Chromosome Location	chr10:116257523-116257524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116255855..116258207-chr10:116259480..116261802,2	MCF-7	breast:
2	chr10:116257493..116259296-chr10:116279810..116281846,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10510005	0.96[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes]
rs10510006	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11196761	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11196762	0.86[JPT][hapmap]
rs11196765	0.85[JPT][hapmap]
rs11814528	0.86[GIH][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs73353754	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7910989	AP1M2	trans	parietal	SCAN

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
4	chr10:116225600-116278800	Weak transcription	HSMM	muscle
5	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
6	chr10:116245000-116258800	Weak transcription	Colonic Mucosa	Colon
7	chr10:116248000-116258200	Weak transcription	Fetal Intestine Large	intestine
8	chr10:116249600-116264800	Weak transcription	Pancreas	Pancrea
9	chr10:116249800-116259400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:116250000-116258400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:116250000-116259400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:116250200-116264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:116250200-116265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:116251000-116259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:116251400-116258400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:116251400-116259200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:116252000-116267200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:116252200-116264800	Weak transcription	Brain Substantia Nigra	brain
19	chr10:116252400-116263800	Weak transcription	Hela-S3	cervix
20	chr10:116252600-116258000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:116252600-116258800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:116252600-116259400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:116252600-116262800	Weak transcription	Psoas Muscle	Psoas
24	chr10:116252600-116264800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:116252600-116264800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:116252600-116264800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:116252800-116258600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:116252800-116259400	Weak transcription	Right Atrium	heart
29	chr10:116253000-116258000	Weak transcription	Small Intestine	intestine
30	chr10:116253000-116258600	Weak transcription	HMEC	breast
31	chr10:116253000-116258800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:116253000-116258800	Weak transcription	NHEK	skin
33	chr10:116253200-116258800	Weak transcription	Fetal Thymus	thymus
34	chr10:116253200-116259400	Weak transcription	Gastric	stomach
35	chr10:116253200-116259400	Weak transcription	Thymus	Thymus
36	chr10:116253200-116264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:116253200-116264800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:116253600-116259400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr10:116253800-116257800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:116254000-116258600	Genic enhancers	Primary T cells from cord blood	blood
41	chr10:116254600-116258000	Weak transcription	Stomach Mucosa	stomach
42	chr10:116254800-116257600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:116255400-116258400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr10:116255400-116258600	Weak transcription	Right Ventricle	heart
45	chr10:116255400-116258800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:116255400-116263000	Weak transcription	Fetal Lung	lung
47	chr10:116255400-116264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:116255400-116264600	Weak transcription	Fetal Kidney	kidney
49	chr10:116255600-116257600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:116255600-116259200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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