Variant report

Variant	rs10510137
Chromosome Location	chr6:37569632-37569633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17574830	1.00[JPT][hapmap]
rs6458003	0.88[ASN][1000 genomes]
rs68147444	0.88[ASN][1000 genomes]
rs6904950	0.88[ASN][1000 genomes]
rs6906840	1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[ASN][1000 genomes]
rs6925202	0.88[ASN][1000 genomes]
rs6932068	0.81[ASN][1000 genomes]
rs9462330	0.88[ASN][1000 genomes]
rs9462331	0.84[ASN][1000 genomes]
rs9462332	0.84[ASN][1000 genomes]
rs9462333	0.84[ASN][1000 genomes]
rs9470630	0.96[ASN][1000 genomes]
rs9470632	0.88[ASN][1000 genomes]
rs9470633	1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs9470640	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10510137	STK38	cis	cerebellum	SCAN
rs10510137	NUDT3	cis	cerebellum	SCAN
rs10510137	LRFN2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37569600-37569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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