Variant report

Variant	rs9470630
Chromosome Location	chr6:37548456-37548457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37548378..37549515-chr6:37659025..37660397,9	MCF-7	breast:
2	chr6:37548373..37549115-chr6:37655960..37656761,2	MCF-7	breast:
3	chr6:37548312..37548991-chr6:37659068..37660023,2	K562	blood:
4	chr6:37548439..37549269-chr6:37659361..37660357,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10510137	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10947676	0.82[JPT][hapmap]
rs12210274	0.82[JPT][hapmap]
rs17574830	1.00[JPT][hapmap]
rs1888683	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3734319	0.82[JPT][hapmap]
rs6458003	0.83[ASN][1000 genomes]
rs68147444	0.83[ASN][1000 genomes]
rs6904950	0.83[ASN][1000 genomes]
rs6906840	1.00[JPT][hapmap]
rs6925202	0.83[ASN][1000 genomes]
rs9462330	0.83[ASN][1000 genomes]
rs9470632	0.83[ASN][1000 genomes]
rs9470633	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9470640	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
2	chr6:37540200-37549400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37544200-37550000	Weak transcription	Esophagus	oesophagus
4	chr6:37544400-37548600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:37544600-37549800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:37544600-37550000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:37544800-37548600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:37545000-37549400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:37545000-37549800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:37545200-37550000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:37545400-37549600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37545400-37549600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:37545400-37549600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:37545400-37550000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:37545400-37550000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:37545800-37549800	Weak transcription	NHEK	skin
17	chr6:37547400-37548600	Weak transcription	Left Ventricle	heart
18	chr6:37547600-37548800	Enhancers	HUVEC	blood vessel
19	chr6:37547800-37548600	Enhancers	K562	blood
20	chr6:37547800-37548800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr6:37548000-37548800	Enhancers	HMEC	breast
22	chr6:37548000-37550200	Enhancers	Placenta	Placenta
23	chr6:37548200-37548600	Weak transcription	Right Ventricle	heart
24	chr6:37548400-37549400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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