Variant report

Variant	rs1888683
Chromosome Location	chr6:37544183-37544184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37534690..37536873-chr6:37542590..37544739,2	MCF-7	breast:
2	chr6:37538192..37539787-chr6:37543021..37546042,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6918006	0.89[AFR][1000 genomes]
rs6918266	0.87[AFR][1000 genomes]
rs7741573	0.89[AFR][1000 genomes]
rs9470620	0.84[AFR][1000 genomes]
rs9470624	0.86[AFR][1000 genomes]
rs9470630	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv522098	chr6:37532103-37545923	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522466	chr6:37532103-37545923	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762587	chr6:37535730-37545923	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
2	chr6:37540200-37549400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37543000-37545200	Enhancers	A549	lung
4	chr6:37543000-37545400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:37543200-37545200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:37543200-37545400	Enhancers	HSMM	muscle
7	chr6:37543400-37544600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:37543400-37545400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:37543400-37545400	Enhancers	HMEC	breast
10	chr6:37543600-37544200	Enhancers	Esophagus	oesophagus
11	chr6:37543600-37544600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37543600-37544800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:37543600-37545200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:37543600-37545200	Enhancers	Hela-S3	cervix
15	chr6:37543600-37545200	Enhancers	NHDF-Ad	bronchial
16	chr6:37543600-37545200	Enhancers	NHLF	lung
17	chr6:37543600-37545400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:37543600-37545400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:37543600-37545800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:37543600-37545800	Enhancers	NHEK	skin
21	chr6:37543800-37544600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37543800-37545400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:37544000-37544200	Flanking Active TSS	HSMMtube	muscle
24	chr6:37544000-37544400	Weak transcription	Right Ventricle	heart
25	chr6:37544000-37544600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:37544000-37544600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:37544000-37544800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:37544000-37544800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:37544000-37544800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:37544000-37545000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:37544000-37545000	Enhancers	Osteobl	bone
32	chr6:37544000-37545200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:37544000-37545200	Enhancers	NH-A	brain
34	chr6:37544000-37545400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:37544000-37545400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:37544000-37546000	Weak transcription	Spleen	Spleen

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