Variant report

Variant	rs10510766
Chromosome Location	chr3:53811341-53811342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53809127..53812085-chr3:53878579..53880876,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000056736	Chromatin interaction
ENSG00000016391	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10510765	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11705918	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11706303	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11708227	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11709505	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11719179	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13068596	0.87[EUR][1000 genomes]
rs13075639	1.00[ASN][1000 genomes]
rs13076366	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13076915	1.00[CHB][hapmap]
rs13082692	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13092344	1.00[ASN][1000 genomes]
rs17053338	1.00[CHB][hapmap]
rs17053532	1.00[ASN][1000 genomes]
rs17641133	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2118421	1.00[ASN][1000 genomes]
rs2125876	1.00[ASN][1000 genomes]
rs2232333	1.00[ASN][1000 genomes]
rs2359204	1.00[ASN][1000 genomes]
rs2633726	1.00[ASN][1000 genomes]
rs28675949	1.00[ASN][1000 genomes]
rs35146621	0.86[EUR][1000 genomes]
rs35377175	1.00[ASN][1000 genomes]
rs35414202	1.00[ASN][1000 genomes]
rs35484438	0.86[EUR][1000 genomes]
rs35657034	1.00[ASN][1000 genomes]
rs3774594	0.81[EUR][1000 genomes]
rs4453827	1.00[ASN][1000 genomes]
rs45560831	1.00[ASN][1000 genomes]
rs45616236	1.00[ASN][1000 genomes]
rs4687586	1.00[CHB][hapmap]
rs55974100	1.00[ASN][1000 genomes]
rs56052250	1.00[ASN][1000 genomes]
rs6445606	1.00[CHB][hapmap]
rs73092085	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs893363	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53789800-53814600	Weak transcription	Brain Substantia Nigra	brain
2	chr3:53802400-53818200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:53806200-53811800	Enhancers	NHDF-Ad	bronchial
4	chr3:53806800-53813000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:53807400-53819200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:53807600-53814800	Weak transcription	Right Atrium	heart
7	chr3:53807600-53829800	Weak transcription	Brain Angular Gyrus	brain
8	chr3:53808000-53815800	Strong transcription	Fetal Lung	lung
9	chr3:53808200-53814800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:53808200-53817600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:53808200-53818400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:53808200-53827800	Strong transcription	Fetal Intestine Small	intestine
13	chr3:53808400-53814800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:53808800-53830200	Weak transcription	Pancreas	Pancrea
15	chr3:53809400-53811400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:53809400-53824400	Strong transcription	Fetal Intestine Large	intestine
17	chr3:53809600-53811600	Enhancers	Liver	Liver
18	chr3:53809800-53811400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:53809800-53811400	Enhancers	Aorta	Aorta
20	chr3:53809800-53811600	Enhancers	HMEC	breast
21	chr3:53809800-53811800	Enhancers	Lung	lung
22	chr3:53810000-53811400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:53810000-53811400	Enhancers	Ovary	ovary
24	chr3:53810200-53811600	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr3:53810200-53811600	Enhancers	Fetal Stomach	stomach
26	chr3:53810400-53811600	Enhancers	Osteobl	bone
27	chr3:53810800-53811800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:53810800-53812400	Enhancers	Fetal Thymus	thymus
29	chr3:53811000-53811600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:53811200-53811400	Enhancers	Spleen	Spleen
31	chr3:53811200-53811400	Flanking Active TSS	NHLF	lung
32	chr3:53811200-53811800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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