Variant report

Variant	rs10510821
Chromosome Location	chr3:59954689-59954690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11707816	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11708404	0.85[AFR][1000 genomes]
rs17031569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061546	1.00[CHB][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061678	0.89[ASN][1000 genomes]
rs2687898	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772460	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3772474	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3772487	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3772489	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58731594	0.89[ASN][1000 genomes]
rs60751140	1.00[ASN][1000 genomes]
rs62240114	0.89[ASN][1000 genomes]
rs72877030	1.00[ASN][1000 genomes]
rs72877033	1.00[ASN][1000 genomes]
rs72877036	1.00[ASN][1000 genomes]
rs7626013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974035	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876838	chr3:59952152-59999690	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59943200-59964400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:59943800-59959600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:59946400-59958200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:59948000-59957600	Weak transcription	Dnd41	blood
5	chr3:59952000-59961600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:59952000-59964400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:59954000-59955400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:59954000-59956200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:59954200-59954800	Enhancers	Fetal Brain Male	brain
10	chr3:59954200-59955000	Genic enhancers	Primary T cells from cord blood	blood
11	chr3:59954200-59955000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:59954400-59954800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:59954400-59954800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:59954400-59954800	Flanking Active TSS	Brain Angular Gyrus	brain
15	chr3:59954400-59954800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:59954400-59955000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:59954400-59955000	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:59954400-59956000	Enhancers	Fetal Brain Female	brain
19	chr3:59954600-59954800	Flanking Active TSS	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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