Variant report

Variant	rs974035
Chromosome Location	chr3:59951596-59951597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1038517	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10510821	0.81[AFR][1000 genomes]
rs11707816	1.00[ASW][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11708404	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11708751	0.88[CEU][hapmap]
rs11711525	0.84[EUR][1000 genomes]
rs11714243	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11715559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11715564	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17031569	0.87[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap]
rs17061546	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs17061598	0.85[YRI][hapmap]
rs212020	1.00[MEX][hapmap]
rs2630192	0.91[EUR][1000 genomes]
rs2736814	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs3772460	1.00[MEX][hapmap]
rs7626013	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs802776	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59943200-59964400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr3:59943400-59951600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:59943800-59959600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:59946400-59951600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:59946400-59958200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:59946600-59951600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:59947600-59951800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:59948000-59957600	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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