Variant report

Variant	rs11715559
Chromosome Location	chr3:59946354-59946355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1038517	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11707816	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs11708404	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11708751	1.00[CEU][hapmap]
rs11711525	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11714243	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11715564	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17031569	0.85[YRI][hapmap]
rs17061546	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17061598	0.84[YRI][hapmap]
rs2630192	0.95[EUR][1000 genomes]
rs2736814	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7626013	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs802776	0.91[EUR][1000 genomes]
rs974035	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59941200-59947600	Strong transcription	Primary T cells from cord blood	blood
2	chr3:59943200-59964400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:59943400-59946600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:59943400-59951600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:59943800-59959600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:59945600-59946400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr3:59945600-59946400	Weak transcription	Dnd41	blood
8	chr3:59945800-59946400	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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