Variant report

Variant	rs10511000
Chromosome Location	chr3:70567353-70567354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13066991	1.00[ASN][1000 genomes]
rs13070884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094712	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491602	1.00[ASN][1000 genomes]
rs1565551	1.00[ASN][1000 genomes]
rs35071663	1.00[ASN][1000 genomes]
rs35751372	1.00[ASN][1000 genomes]
rs35807064	1.00[ASN][1000 genomes]
rs4491862	1.00[ASN][1000 genomes]
rs6786654	1.00[ASN][1000 genomes]
rs68093214	1.00[ASN][1000 genomes]
rs957343	1.00[ASN][1000 genomes]
rs957344	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999046	chr3:70549472-70576944	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10511000	PDZRN3	cis	parietal	SCAN
rs10511000	GATA3	trans	parietal	SCAN
rs10511000	LUZP2	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70565400-70568400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:70566000-70567800	Enhancers	Fetal Stomach	stomach
3	chr3:70566800-70568400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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