Variant report

Variant	rs13094712
Chromosome Location	chr3:70576942-70576943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511000	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066991	1.00[ASN][1000 genomes]
rs13070884	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491602	1.00[ASN][1000 genomes]
rs1565551	1.00[ASN][1000 genomes]
rs35071663	1.00[ASN][1000 genomes]
rs35751372	1.00[ASN][1000 genomes]
rs35807064	1.00[ASN][1000 genomes]
rs4491862	1.00[ASN][1000 genomes]
rs6786654	1.00[ASN][1000 genomes]
rs68093214	1.00[ASN][1000 genomes]
rs957343	1.00[ASN][1000 genomes]
rs957344	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999046	chr3:70549472-70576944	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13094712	LUZP2	trans	parietal	SCAN
rs13094712	GATA3	trans	parietal	SCAN
rs13094712	PDZRN3	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70570200-70580800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:70576400-70580400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:70576600-70577000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:70576600-70579600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:70576600-70580400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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