Variant report

Variant	rs10511302
Chromosome Location	chr3:111687756-111687757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111687384..111693123-chr3:111694122..111699729,7	MCF-7	breast:
2	chr3:111687115..111689954-chr3:111695002..111696517,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11708860	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12486270	0.85[JPT][hapmap]
rs12489716	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13064126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13065025	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13065303	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682326	0.82[JPT][hapmap]
rs715760	0.81[JPT][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
3	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
5	chr3:111658600-111697400	Weak transcription	Gastric	stomach
6	chr3:111661600-111689800	Weak transcription	Ovary	ovary
7	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
8	chr3:111673000-111688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:111673000-111688400	Weak transcription	Fetal Stomach	stomach
10	chr3:111673000-111697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:111673000-111697400	Weak transcription	Pancreas	Pancrea
12	chr3:111675000-111697400	Weak transcription	Lung	lung
13	chr3:111678200-111687800	Weak transcription	Right Ventricle	heart
14	chr3:111678200-111692800	Weak transcription	Aorta	Aorta
15	chr3:111681200-111689800	Weak transcription	Thymus	Thymus
16	chr3:111681400-111694400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:111681400-111697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:111681400-111697400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:111682400-111689800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:111682400-111694600	Strong transcription	NH-A	brain
21	chr3:111682600-111690800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:111683000-111695200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:111683600-111688200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:111685200-111688200	Enhancers	Fetal Heart	heart
25	chr3:111685400-111688600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:111685400-111697400	Weak transcription	Fetal Brain Male	brain
27	chr3:111685800-111688200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:111685800-111691000	Enhancers	Fetal Lung	lung
29	chr3:111686000-111687800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:111686200-111688000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:111686400-111687800	Weak transcription	NHDF-Ad	bronchial
32	chr3:111686400-111694000	Strong transcription	HMEC	breast
33	chr3:111686400-111694600	Strong transcription	NHEK	skin
34	chr3:111686400-111697200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:111686400-111697200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:111686600-111689400	Strong transcription	HSMMtube	muscle
37	chr3:111686600-111689800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:111686600-111691600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:111686600-111694000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:111686600-111697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:111686600-111697200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:111686600-111697200	Weak transcription	Fetal Intestine Large	intestine
43	chr3:111686600-111697200	Weak transcription	HepG2	liver
44	chr3:111686600-111697400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:111686600-111697400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:111686600-111697400	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:111686600-111697400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr3:111686800-111687800	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:111686800-111688200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:111686800-111688800	Strong transcription	Left Ventricle	heart

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