Variant report

Variant	rs12486270
Chromosome Location	chr3:111691174-111691175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111687384..111693123-chr3:111694122..111699729,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144827	Chromatin interaction

rs_ID	r²[population]
rs10511302	0.85[JPT][hapmap]
rs11708860	0.87[JPT][hapmap]
rs13065025	0.91[JPT][hapmap]
rs1994731	0.90[JPT][hapmap]
rs4682326	0.86[JPT][hapmap]

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
2	chr3:111658600-111697400	Weak transcription	Gastric	stomach
3	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
4	chr3:111673000-111697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:111673000-111697400	Weak transcription	Pancreas	Pancrea
6	chr3:111675000-111697400	Weak transcription	Lung	lung
7	chr3:111678200-111692800	Weak transcription	Aorta	Aorta
8	chr3:111681400-111694400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:111681400-111697200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:111681400-111697400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:111682400-111694600	Strong transcription	NH-A	brain
12	chr3:111683000-111695200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:111685400-111697400	Weak transcription	Fetal Brain Male	brain
14	chr3:111686400-111694000	Strong transcription	HMEC	breast
15	chr3:111686400-111694600	Strong transcription	NHEK	skin
16	chr3:111686400-111697200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:111686400-111697200	Weak transcription	Fetal Intestine Small	intestine
18	chr3:111686600-111691600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:111686600-111694000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:111686600-111697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:111686600-111697200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:111686600-111697200	Weak transcription	Fetal Intestine Large	intestine
23	chr3:111686600-111697200	Weak transcription	HepG2	liver
24	chr3:111686600-111697400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:111686600-111697400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:111686600-111697400	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:111686600-111697400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:111686800-111694000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:111686800-111697200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:111687000-111694000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:111687000-111694000	Strong transcription	Adipose Nuclei	Adipose
32	chr3:111687000-111695000	Strong transcription	HSMM	muscle
33	chr3:111687000-111695200	Strong transcription	HUVEC	blood vessel
34	chr3:111687200-111694600	Strong transcription	Osteobl	bone
35	chr3:111687800-111694200	Strong transcription	Liver	Liver
36	chr3:111687800-111695400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:111688000-111697000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:111688200-111695200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:111688200-111695400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:111688200-111697400	Weak transcription	Right Ventricle	heart
41	chr3:111688600-111694000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:111688800-111697200	Weak transcription	Psoas Muscle	Psoas
43	chr3:111688800-111697400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:111688800-111697400	Weak transcription	NHLF	lung
45	chr3:111689200-111697400	Weak transcription	NHDF-Ad	bronchial
46	chr3:111689400-111695000	Weak transcription	A549	lung
47	chr3:111689800-111691200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:111689800-111692000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:111690200-111692600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:111690400-111692600	Weak transcription	Placenta Amnion	Placenta Amnion

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