Variant report

Variant	rs10512260
Chromosome Location	chr9:101504675-101504676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101503154..101505229-chr9:101508014..101510177,2	K562	blood:
2	chr9:101504211..101507100-chr9:101517037..101519199,2	K562	blood:
3	chr9:101504211..101506273-chr9:101517094..101519199,2	K562	blood:
4	chr9:101447860..101450786-chr9:101503921..101506434,3	MCF-7	breast:
5	chr9:101498432..101500803-chr9:101503543..101505424,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11791408	1.00[ASW][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes]
rs1930132	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs337580	0.82[YRI][hapmap]
rs337589	1.00[ASW][hapmap];0.96[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs57644057	0.96[AFR][1000 genomes]
rs57882865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58834774	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61335015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61383603	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491756	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73491783	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493922	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2830198	chr9:101477500-101512140	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101486400-101513000	Weak transcription	Right Atrium	heart
2	chr9:101489800-101520800	Weak transcription	Fetal Brain Male	brain
3	chr9:101491000-101505800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:101491000-101518000	Weak transcription	Thymus	Thymus
5	chr9:101492800-101505800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:101493000-101507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:101494000-101532600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr9:101494000-101535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:101494200-101505600	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:101494200-101509000	Strong transcription	Primary T cells from cord blood	blood
11	chr9:101494200-101516800	Weak transcription	Psoas Muscle	Psoas
12	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
13	chr9:101494600-101520800	Weak transcription	Fetal Kidney	kidney
14	chr9:101494800-101506200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
16	chr9:101496800-101508400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:101497200-101506400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:101497600-101518000	Weak transcription	Primary B cells from cord blood	blood
19	chr9:101498400-101507400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr9:101498400-101509000	Weak transcription	Fetal Thymus	thymus
21	chr9:101498600-101505200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:101498600-101506600	Weak transcription	Liver	Liver
23	chr9:101498600-101507000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:101498600-101510200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:101498600-101511600	Weak transcription	HSMMtube	muscle
26	chr9:101498800-101505200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:101498800-101505800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:101498800-101505800	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:101498800-101505800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:101498800-101505800	Weak transcription	Fetal Brain Female	brain
31	chr9:101498800-101506200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:101498800-101506400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:101498800-101506400	Weak transcription	Pancreas	Pancrea
34	chr9:101498800-101506400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:101498800-101506600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:101498800-101507200	Weak transcription	Esophagus	oesophagus
37	chr9:101498800-101507400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:101498800-101507400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr9:101498800-101507600	Weak transcription	Brain Angular Gyrus	brain
40	chr9:101498800-101517400	Weak transcription	Colonic Mucosa	Colon
41	chr9:101498800-101529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr9:101499000-101505400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:101499000-101506400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:101499000-101506600	Weak transcription	Left Ventricle	heart
45	chr9:101499000-101506800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:101499000-101514200	Weak transcription	Right Ventricle	heart
47	chr9:101499000-101516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr9:101499200-101507000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:101499200-101509600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:101499200-101529800	Weak transcription	Placenta	Placenta

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