Variant report
| Variant | rs57882865 |
|---|---|
| Chromosome Location | chr9:101486647-101486648 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10512260 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11787982 | 1.00[ASN][1000 genomes] |
| rs11788506 | 1.00[ASN][1000 genomes] |
| rs11788953 | 1.00[ASN][1000 genomes] |
| rs11789133 | 1.00[ASN][1000 genomes] |
| rs11790188 | 1.00[ASN][1000 genomes] |
| rs11790900 | 1.00[ASN][1000 genomes] |
| rs11791408 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11792301 | 1.00[ASN][1000 genomes] |
| rs11792605 | 0.87[ASN][1000 genomes] |
| rs11793365 | 1.00[ASN][1000 genomes] |
| rs11794260 | 1.00[ASN][1000 genomes] |
| rs11794814 | 0.87[ASN][1000 genomes] |
| rs11794957 | 1.00[ASN][1000 genomes] |
| rs11795201 | 1.00[ASN][1000 genomes] |
| rs1930132 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28512311 | 1.00[ASN][1000 genomes] |
| rs337589 | 0.94[AFR][1000 genomes] |
| rs41283626 | 1.00[ASN][1000 genomes] |
| rs41283630 | 1.00[ASN][1000 genomes] |
| rs45543535 | 1.00[ASN][1000 genomes] |
| rs57644057 | 0.97[AFR][1000 genomes] |
| rs58834774 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs61025806 | 1.00[ASN][1000 genomes] |
| rs61335015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61383603 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73491756 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73491783 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73491789 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73493922 | 0.96[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv614936 | chr9:101182698-101680380 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv893614 | chr9:101340316-101671634 | Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv893615 | chr9:101356515-101678036 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 4 | esv2830198 | chr9:101477500-101512140 | Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:101486400-101513000 | Weak transcription | Right Atrium | heart |
