Variant report

Variant	rs11794957
Chromosome Location	chr9:101520196-101520197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS6-2	chr9:101519307-101520390	l_3822_chr9:101387877-101520361_testes

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11787982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11791408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11793007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11795201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28512311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35229220	1.00[EUR][1000 genomes]
rs41283626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283630	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45543535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57882865	1.00[ASN][1000 genomes]
rs61025806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61335015	1.00[ASN][1000 genomes]
rs73491756	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101489800-101520800	Weak transcription	Fetal Brain Male	brain
2	chr9:101494000-101532600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr9:101494000-101535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
5	chr9:101494600-101520800	Weak transcription	Fetal Kidney	kidney
6	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
7	chr9:101498800-101529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:101499200-101529800	Weak transcription	Placenta	Placenta
9	chr9:101503000-101537400	Weak transcription	HUVEC	blood vessel
10	chr9:101504200-101520200	Strong transcription	Fetal Intestine Large	intestine
11	chr9:101504400-101520600	Strong transcription	Fetal Muscle Leg	muscle
12	chr9:101504400-101523400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:101505000-101520400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr9:101505000-101520800	Weak transcription	HMEC	breast
15	chr9:101506200-101527000	Weak transcription	NHDF-Ad	bronchial
16	chr9:101506600-101529200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:101506800-101553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:101507400-101533200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:101508000-101532800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:101508600-101557400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:101510000-101534600	Weak transcription	NHLF	lung
22	chr9:101510200-101523000	Strong transcription	Primary T cells from cord blood	blood
23	chr9:101510400-101520400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:101510800-101520800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:101511000-101520400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:101511200-101520600	Weak transcription	HSMM	muscle
27	chr9:101514400-101553400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:101514600-101520800	Weak transcription	NHEK	skin
29	chr9:101514600-101522200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr9:101514800-101533800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:101515200-101530000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:101515200-101530000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:101515800-101520400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr9:101516000-101521200	Strong transcription	Brain Hippocampus Middle	brain
35	chr9:101516600-101521000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr9:101516600-101529600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:101516800-101521200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr9:101516800-101527600	Weak transcription	Pancreas	Pancrea
39	chr9:101517600-101521600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:101517600-101537400	Weak transcription	NH-A	brain
41	chr9:101517800-101529400	Weak transcription	Brain Germinal Matrix	brain
42	chr9:101517800-101529800	Weak transcription	Colonic Mucosa	Colon
43	chr9:101518200-101528800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:101518200-101533400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:101518200-101537400	Weak transcription	Hela-S3	cervix
46	chr9:101518400-101529800	Weak transcription	Spleen	Spleen
47	chr9:101518600-101520200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:101518600-101520600	Weak transcription	A549	lung
49	chr9:101518600-101527400	Weak transcription	K562	blood
50	chr9:101518600-101529200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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