Variant report

Variant	rs28397053
Chromosome Location	chr9:101507375-101507376
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:118301097..118301698-chr9:101507278..101507778,2	MCF-7	breast:
2	chr9:101506100..101507722-chr9:101508946..101511685,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11787982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11789133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11790188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11790900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11791355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11791408	1.00[EUR][1000 genomes]
rs11792301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11794260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11794814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11794957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11795201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28512311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35229220	1.00[EUR][1000 genomes]
rs41283626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41283630	1.00[EUR][1000 genomes]
rs45543535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61025806	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2830198	chr9:101477500-101512140	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101486400-101513000	Weak transcription	Right Atrium	heart
2	chr9:101489800-101520800	Weak transcription	Fetal Brain Male	brain
3	chr9:101491000-101518000	Weak transcription	Thymus	Thymus
4	chr9:101493000-101507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:101494000-101532600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:101494000-101535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:101494200-101509000	Strong transcription	Primary T cells from cord blood	blood
8	chr9:101494200-101516800	Weak transcription	Psoas Muscle	Psoas
9	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
10	chr9:101494600-101520800	Weak transcription	Fetal Kidney	kidney
11	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
12	chr9:101496800-101508400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:101497600-101518000	Weak transcription	Primary B cells from cord blood	blood
14	chr9:101498400-101507400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr9:101498400-101509000	Weak transcription	Fetal Thymus	thymus
16	chr9:101498600-101510200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:101498600-101511600	Weak transcription	HSMMtube	muscle
18	chr9:101498800-101507400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:101498800-101507400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:101498800-101507600	Weak transcription	Brain Angular Gyrus	brain
21	chr9:101498800-101517400	Weak transcription	Colonic Mucosa	Colon
22	chr9:101498800-101529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:101499000-101514200	Weak transcription	Right Ventricle	heart
24	chr9:101499000-101516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:101499200-101509600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:101499200-101529800	Weak transcription	Placenta	Placenta
27	chr9:101499400-101507400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:101501400-101507600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:101501800-101515400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:101502000-101510800	Weak transcription	Brain Anterior Caudate	brain
31	chr9:101502000-101519000	Strong transcription	Fetal Intestine Small	intestine
32	chr9:101502200-101509400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:101502200-101519600	Strong transcription	Fetal Stomach	stomach
34	chr9:101502800-101507400	Weak transcription	Spleen	Spleen
35	chr9:101503000-101537400	Weak transcription	HUVEC	blood vessel
36	chr9:101503200-101509000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:101504200-101509200	Strong transcription	Aorta	Aorta
38	chr9:101504200-101520200	Strong transcription	Fetal Intestine Large	intestine
39	chr9:101504400-101520600	Strong transcription	Fetal Muscle Leg	muscle
40	chr9:101504400-101523400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:101504800-101512200	Strong transcription	Lung	lung
42	chr9:101505000-101507600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:101505000-101510400	Weak transcription	NHEK	skin
44	chr9:101505000-101515000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr9:101505000-101515200	Weak transcription	Osteobl	bone
46	chr9:101505000-101515400	Strong transcription	Gastric	stomach
47	chr9:101505000-101516000	Weak transcription	NH-A	brain
48	chr9:101505000-101520400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr9:101505000-101520800	Weak transcription	HMEC	breast
50	chr9:101505200-101508600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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