Variant report

Variant	rs61025806
Chromosome Location	chr9:101518270-101518271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101504211..101506273-chr9:101517094..101519199,2	K562	blood:
2	chr9:101076029..101078815-chr9:101516431..101518577,2	MCF-7	breast:
3	chr9:101510163..101513156-chr9:101515125..101518674,3	MCF-7	breast:
4	chr9:101504211..101507100-chr9:101517037..101519199,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11787982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791355	1.00[EUR][1000 genomes]
rs11791408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792605	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11793007	1.00[EUR][1000 genomes]
rs11793365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794814	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11794957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397053	1.00[EUR][1000 genomes]
rs28512311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35229220	1.00[EUR][1000 genomes]
rs41283626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45543535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57882865	1.00[ASN][1000 genomes]
rs61335015	1.00[ASN][1000 genomes]
rs7035622	0.80[AFR][1000 genomes]
rs7037347	0.80[AFR][1000 genomes]
rs73491756	1.00[ASN][1000 genomes]
rs7857097	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101489800-101520800	Weak transcription	Fetal Brain Male	brain
2	chr9:101494000-101532600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr9:101494000-101535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
5	chr9:101494600-101520800	Weak transcription	Fetal Kidney	kidney
6	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
7	chr9:101498800-101529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:101499200-101529800	Weak transcription	Placenta	Placenta
9	chr9:101502000-101519000	Strong transcription	Fetal Intestine Small	intestine
10	chr9:101502200-101519600	Strong transcription	Fetal Stomach	stomach
11	chr9:101503000-101537400	Weak transcription	HUVEC	blood vessel
12	chr9:101504200-101520200	Strong transcription	Fetal Intestine Large	intestine
13	chr9:101504400-101520600	Strong transcription	Fetal Muscle Leg	muscle
14	chr9:101504400-101523400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:101505000-101520400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr9:101505000-101520800	Weak transcription	HMEC	breast
17	chr9:101505800-101519000	Strong transcription	Adipose Nuclei	Adipose
18	chr9:101506200-101519000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:101506200-101519800	Strong transcription	Stomach Smooth Muscle	stomach
20	chr9:101506200-101527000	Weak transcription	NHDF-Ad	bronchial
21	chr9:101506400-101519200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:101506600-101529200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:101506800-101519600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:101506800-101553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr9:101507400-101533200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:101508000-101532800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr9:101508600-101557400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr9:101509400-101520000	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr9:101510000-101534600	Weak transcription	NHLF	lung
30	chr9:101510200-101519000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:101510200-101519800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:101510200-101523000	Strong transcription	Primary T cells from cord blood	blood
33	chr9:101510400-101520400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:101510800-101518600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:101510800-101520800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:101511000-101519200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:101511000-101520400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr9:101511200-101518800	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr9:101511200-101519000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:101511200-101519000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr9:101511200-101519800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr9:101511200-101520600	Weak transcription	HSMM	muscle
43	chr9:101511400-101518800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:101511600-101518800	Strong transcription	Ovary	ovary
45	chr9:101511800-101518800	Strong transcription	Aorta	Aorta
46	chr9:101511800-101519000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:101512400-101519800	Strong transcription	Brain Cingulate Gyrus	brain
48	chr9:101513600-101518800	Strong transcription	Lung	lung
49	chr9:101513800-101519000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:101513800-101519600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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