Variant report

Variant	rs11788953
Chromosome Location	chr9:101538976-101538977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101536018..101539234-chr9:101540914..101545931,7	K562	blood:
2	chr9:101531326..101533828-chr9:101536485..101539182,2	K562	blood:
3	chr9:101510269..101512280-chr9:101537348..101539564,2	K562	blood:
4	chr9:101537500..101539404-chr9:101539864..101542851,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11787982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11791408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11793007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794814	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11794957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28512311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35229220	1.00[EUR][1000 genomes]
rs41283626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283630	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45543535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57882865	1.00[ASN][1000 genomes]
rs61025806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61335015	1.00[ASN][1000 genomes]
rs73491756	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101494400-101553000	Weak transcription	Fetal Heart	heart
2	chr9:101496600-101549400	Weak transcription	Small Intestine	intestine
3	chr9:101506800-101553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr9:101508600-101557400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:101514400-101553400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:101518800-101557200	Weak transcription	Psoas Muscle	Psoas
7	chr9:101521200-101557600	Weak transcription	Fetal Brain Male	brain
8	chr9:101523600-101542600	Weak transcription	Stomach Mucosa	stomach
9	chr9:101526400-101549400	Strong transcription	Stomach Smooth Muscle	stomach
10	chr9:101528200-101543800	Weak transcription	HMEC	breast
11	chr9:101530200-101547600	Weak transcription	NHDF-Ad	bronchial
12	chr9:101530400-101557800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:101531400-101540400	Strong transcription	K562	blood
14	chr9:101532400-101540600	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr9:101533800-101553200	Strong transcription	Fetal Stomach	stomach
16	chr9:101534000-101557600	Weak transcription	Right Atrium	heart
17	chr9:101534200-101542200	Weak transcription	Fetal Thymus	thymus
18	chr9:101534400-101545800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:101535600-101553400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:101535800-101541200	Weak transcription	Fetal Kidney	kidney
21	chr9:101535800-101542200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:101535800-101552000	Weak transcription	Thymus	Thymus
23	chr9:101535800-101553400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:101535800-101557400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:101536000-101539000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:101536000-101539200	Weak transcription	Fetal Lung	lung
27	chr9:101536000-101539400	Weak transcription	Brain Substantia Nigra	brain
28	chr9:101536000-101541200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:101536000-101543600	Weak transcription	NHEK	skin
30	chr9:101536000-101544400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:101536000-101553200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr9:101536000-101557600	Weak transcription	Primary B cells from cord blood	blood
33	chr9:101536200-101539000	Weak transcription	Brain Anterior Caudate	brain
34	chr9:101536200-101539200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:101536200-101539400	Weak transcription	Placenta	Placenta
36	chr9:101536200-101539400	Weak transcription	Left Ventricle	heart
37	chr9:101536200-101543400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:101536200-101543600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:101536200-101543600	Weak transcription	Osteobl	bone
40	chr9:101536200-101543800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:101536200-101544400	Weak transcription	HSMM	muscle
42	chr9:101536200-101553400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:101536400-101541000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:101536400-101543600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:101536400-101543800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr9:101536600-101539200	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:101536600-101539400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:101536600-101543800	Weak transcription	Liver	Liver
49	chr9:101536600-101544400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:101536600-101557600	Weak transcription	Brain Germinal Matrix	brain

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